Afra002307.2
Basic Information
- Insect
- Anastrepha fraterculus
- Gene Symbol
- -
- Assembly
- GCA_037575425.1
- Location
- JAYXIM010002674.1:332660-336985[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.041 5.7 8.9 2.3 1 23 393 416 393 416 0.94 2 9 1 1.4e+02 4.5 0.1 2 16 424 438 423 440 0.90 3 9 1.8e-06 0.00025 22.6 0.2 2 23 480 501 479 501 0.97 4 9 0.012 1.7 10.5 3.7 2 23 541 563 540 563 0.94 5 9 0.0087 1.2 11.0 2.7 2 21 577 596 576 597 0.93 6 9 3e-05 0.0041 18.8 3.7 1 23 628 650 628 650 0.96 7 9 0.0012 0.17 13.7 0.6 1 23 655 678 655 678 0.96 8 9 0.0004 0.055 15.2 3.6 2 23 685 706 684 706 0.97 9 9 8.8 1.2e+03 1.5 3.7 3 23 744 764 742 764 0.92
Sequence Information
- Coding Sequence
- ATGGATCAGGTTGCCCACGTAGAAGCGTGTCGCCTTTGTGCAAATTTCTATGTGACCGGCGCTGATGTAGAATTTATCCATCTCTTTGAGCCGCTAACAGGACTTGAGGATCAATTAGATTTTGTGCATAAACAATCGGTGGCATGGCAATTACATATATCGGCCGACGACAGTTTGCCGCAACGTATTTGTGCCAATTGCTTTGCACAATTCTGCAACATACAGACATTCCGTCAGCAATGTTTATTAGCAGAACAAAAATTGTTGGAATCATTTGTGGACGTTAGTTTGGCTGACAATGGTCCAACTGCTAAAGGCAGCAAACAGACGGGGCCGATGTCACAAGGGGCGAACGGCACCGCTGGGTTGTCGAATGACAATGAGCTGTTGAACGGGTTAAAAATCGCTGCACCAGTCACAAGCGCTGATCTGATGGCAACCTTGGATGGCCTACAACCACCGACAACCAGCGCCGATGTCATAGCCAGTTTGGACGGTCTGCAACTGCCCGCCAGTGTAGCAGAAACCCTCTCCATACTCACGCAAGAGTTGACCACAATGCAAAATGGCACTTTGCTGGATACCAGCGCCAACTCGATCACCACACATGCTACCATGGACACCAAGACGGAGGAGACGAATGTGTTGCAATTGCCAGCGGCTTCAACAACGCAAAATATTTACTATGCGCAGCATACCCCTATTACAACAGTAGCGGCAGGAACAAATAAAACAGCAACTATGATGACAAACGCGCACGCAAAAAGTGTTGAAGCAGCGAAGGGTGAGAAGGCGGATATTGATTTAGAAGATATGTTGCAAGGCAGCATAATACCGAAACATTCGAGATCAAATAATTTGCAACAAGAAATGTATGAAGAGGTGAAGGAAGAGCAGCATTTCAGCAGGGAAGAAACTCAACAAAGTTTTTCCTCGTTCGAGGGCATGGTAGATGAGGATATGGACTGTATTTCATGCTCTGATCAGGACGAATATAATGAAATGGAAGACTTCGAACCTGATGCGGATGCAGTATCACCAACATGTGTCTCGCGCAATTCATTTACCTGTCAATACTGTTATTGCCCGAATTCCGGTTCTATCGATCATTTAGTATTTGATAGTTCCGACGCGTTATCTCAGCATTTCTTTGACGTGCATGATCCCAATTTGCCCTACACTTGTCCGTACTGCCCACAGAAATATTGTTCCGCCAGGCAACGCGACTATCACGTTCGCCTTATGCATCCGACTGCATCGAAGGCAGACCAATGCGAATATTGCAAAAGGATATTGCGCAGTCCAAAGGAGTTACATGAGTTGAGCTGTCAATATGTAGGCGATTGGCGTTGTGACATATGTGACCAATGCTTCTACCACGTGCCACTGAGTCGCCTCCGCACTCATCAGCGCCGTCATACCACCAAAAACCAGTTAAAATGCCGTGTATGCGGACGCGTTTTTATACGACGCGCCAATCTAGAGGCACATGAGCGTATGCATCGGCCACGGGACAGCTTCACAATACACTGTGATCAATGCCAAGAAGGTTTTTTATTTTCAAACGATTACGAGCTACGTCGTCATAAGTATCAGGCGCACAATGGCGCTTTGCCAGTACGTTGCGAATACTGTCACAAAGGCTTTGTTAGCATGGCCTTCCTCAGTCGGCATACACAACACTTCCATCCGGATAAGATAGACGGTAATCATCTCGGTGCCGCCACCACTTGCACTAATTGCGGTTGTGCGTTCACTTCACTGCATAAGCTACGCATGCACGTACAACGACCGCGTGACGAAAATGGACGTTGCATTGAAATTGTGCGTGAAGCCGTGTCAAACCAAGATCGAACACGTCAATTGCGCCGGCCAAGACTGCACGCTTGTGCACATTGTAATAAACGGTTTACGACGCGTGCGGCTCTCGAAAGGCATACGAGTACGCATGAGACGACCTCGTATAGCTGCAGGGCATGTTCTACACGCTTTGAGAATGCCAACGAACTGAAACGGCACATTATGCAGATGCACGCCAAACCACGCTACCTAAAGTGTGATATGTGTGAGAAACGTTTCTGCTATATGCGCGAACTGCAACAGCATCAGAAAGTGCACGCTGAGGCACCAGAAAACAACCTTTCCTGTCCCGTACTCAATTGCGGTTTCAAATCATCAAGCACGAAAGAAGCTCACGATCACGCATTTGTCAAGCATAAACTGATCGCTTGTGAGTTTTGCGACTGTCTCTTCACACGCAATCGTCTGACAACTCATCTACATACTGTGCATGCCGCAGAAGTAGCAACGGAAGAAccgaacaataacaataacaacaacagcacaagTCGAACTAACGCGCTAGATTCACAAACGGAAGATTCTTTGGCGGTGGCGAGCATACTCGACGCTGATGCCCAAATGAATAACAATGACATAATGGTCTCATTCGAAGATAGCGCCATAAATGGTGGCGAGAAGGTGCGCGTGGAGCTGGTGCAGCAGCACACGCCCAGTGTTGGTAATTTGGTGTTGCAAGAGCAAACGTCTAACACCTTTAAACCACTCATTCCAACGACCGATGAAATGGATCAGAATTTCCTGATGAACGCTTTGCTCGATCCGGATCATGAAATCATAGTCACATGA
- Protein Sequence
- MDQVAHVEACRLCANFYVTGADVEFIHLFEPLTGLEDQLDFVHKQSVAWQLHISADDSLPQRICANCFAQFCNIQTFRQQCLLAEQKLLESFVDVSLADNGPTAKGSKQTGPMSQGANGTAGLSNDNELLNGLKIAAPVTSADLMATLDGLQPPTTSADVIASLDGLQLPASVAETLSILTQELTTMQNGTLLDTSANSITTHATMDTKTEETNVLQLPAASTTQNIYYAQHTPITTVAAGTNKTATMMTNAHAKSVEAAKGEKADIDLEDMLQGSIIPKHSRSNNLQQEMYEEVKEEQHFSREETQQSFSSFEGMVDEDMDCISCSDQDEYNEMEDFEPDADAVSPTCVSRNSFTCQYCYCPNSGSIDHLVFDSSDALSQHFFDVHDPNLPYTCPYCPQKYCSARQRDYHVRLMHPTASKADQCEYCKRILRSPKELHELSCQYVGDWRCDICDQCFYHVPLSRLRTHQRRHTTKNQLKCRVCGRVFIRRANLEAHERMHRPRDSFTIHCDQCQEGFLFSNDYELRRHKYQAHNGALPVRCEYCHKGFVSMAFLSRHTQHFHPDKIDGNHLGAATTCTNCGCAFTSLHKLRMHVQRPRDENGRCIEIVREAVSNQDRTRQLRRPRLHACAHCNKRFTTRAALERHTSTHETTSYSCRACSTRFENANELKRHIMQMHAKPRYLKCDMCEKRFCYMRELQQHQKVHAEAPENNLSCPVLNCGFKSSSTKEAHDHAFVKHKLIACEFCDCLFTRNRLTTHLHTVHAAEVATEEPNNNNNNNSTSRTNALDSQTEDSLAVASILDADAQMNNNDIMVSFEDSAINGGEKVRVELVQQHTPSVGNLVLQEQTSNTFKPLIPTTDEMDQNFLMNALLDPDHEIIVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00083499;
- 90% Identity
- iTF_00083499;
- 80% Identity
- -