Basic Information

Insect: Anastrepha fraterculus
Gene Symbol: ush
Assembly: GCA_037575425.1
Location: JAYXIM010025139.1:319018-333018[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.011 1.5 10.7 0.1 1 20 217 236 217 238 0.90

2 9 0.00039 0.054 15.2 0.8 1 23 299 321 299 321 0.98

3 9 0.075 10 8.0 0.8 2 20 352 370 352 372 0.92

4 9 0.067 9.3 8.2 2.9 2 21 793 812 792 813 0.93

5 9 0.012 1.7 10.5 0.0 3 21 856 874 854 875 0.91

6 9 0.026 3.6 9.5 0.1 1 23 959 981 959 981 0.98

7 9 2.3 3.2e+02 3.4 3.2 1 23 987 1009 987 1009 0.98

8 9 0.00099 0.14 14.0 0.6 1 23 1081 1104 1081 1104 0.96

9 9 0.21 30 6.6 0.5 2 21 1236 1255 1235 1256 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.011	1.5	10.7	0.1	1	20	217	236	217	238	0.90
2	9	0.00039	0.054	15.2	0.8	1	23	299	321	299	321	0.98
3	9	0.075	10	8.0	0.8	2	20	352	370	352	372	0.92
4	9	0.067	9.3	8.2	2.9	2	21	793	812	792	813	0.93
5	9	0.012	1.7	10.5	0.0	3	21	856	874	854	875	0.91
6	9	0.026	3.6	9.5	0.1	1	23	959	981	959	981	0.98
7	9	2.3	3.2e+02	3.4	3.2	1	23	987	1009	987	1009	0.98
8	9	0.00099	0.14	14.0	0.6	1	23	1081	1104	1081	1104	0.96
9	9	0.21	30	6.6	0.5	2	21	1236	1255	1235	1256	0.92

Sequence Information

Coding Sequence: ATGAAAGGAGAGTGGGAGAAAATAGATCCTTTGACATATTCCAAAGATCTGAGTCCCACCGACCTATCAGATGATCAACATCATTTAGAGAATGATGATCATCGACACGAAGAGACTGACATCGAAATGGAAGACGACACAGGCACAAGAGAAGGCTACGTTCGAATATCTACTCCAACTACAAATCGAATATCACCCGTTATAAGAGTAGAAAATGAAGTAAGTCGTCCACCGAGTACAATGGCATCGAATGAGTCGAATTCTACCGATACATTTCACACTTATAACGAATCCACGGAACGCAAAATCGAATTAAATATAGAACCTGAGAAACTTCAAGAACAAAAGCACATGAGTATCGAATCAACTTCATCAAATTCAAATGACAAGCGTCCGGTCAGCAGCAGCCCGCATAAGGACGAACCGGCAGGTAATGGTACACCACCCGTATCGTCACCAACAAGCATAATGCCAAAGTTACGCTTGAATGCGCTACTGGCTTCAGATCCAGCCTTGAAGCCGGATGCAAGAGATCTTAAAGTTTTACACGAAGAAACGCAAACAAAAAATCGGCTGGCACAACTGCCACCACCACCGGCGCTTACCAAGCAAGAAGACCTAGAAACGTTGATGAATGCGCCTGGGTTGTTCATGTGCTTGCCATGTGGCATCCACTTTAGCTCGCCATCAACGTTGGAGGCACATCAAGCATACTATTGCTCGCATCGCAACAAGGACATGGAAAGCGATGGCGCTTCACTCTCCACGGTAATAGCTGAGAAAAGTGCCGGCATGAACGCGAACGCCGCCAGCACATCGGGTAGCACCAGCGGTGCCGGTGCGGGCAACACGAGTGGCGAACCAAACACTAAAGCCATTAAGACTGGAAAACAATATGCGTGCACACAATGCTCCTACAGCGCCGACAAGAAGGTCTCCCTGAATAGACATATGCGCATGCATCAAACATCGCCGGCCCATAGCAGCAACGCGCCACCATTAAACGGGGCAGCCGCGCTGGAGGAGGGCGTTTCTAGTCAAcAAACGGATCGTTACTGCAGTGATTGTGATATAAGATTCAATAATATAAAGACGTATCGCGCGCATAAGTTGCATTACTGCAGTTCACGGCGTACTGAAGGGCAACTAACACCTAAGCTGGAGGTTAGCACTGCTAATGCAATAAAAGCGCCAACGGGTGCAGCCGCCATCAGCCCACAGACGCGCACGAAAACACCAACACCGGCTATGGTCGCTGCTGCCGCTGCggcggctgctgctgctgccgcatCTTTGCAAACCACGCCGCCGCAACCATTTTTGGCATTGCCCACCAATCCAATATTGATAATTCCCTGCTCATTAATACGCGCTGCCAGCTGGATACCAGGACCACTCACCTCAGTATCGGCGGGCATTCCACAGCCTGACAATACCTGCTATATGTTGGATAATGGCAATTTGAAACCAGTAGCCACGGCTTTGAATATGAGCGGACTGAACCCCAGCGTAGCAACAAGTAATAATaactcagcagcagcagcggcagcctCACAAATGTCTAATGTCGAAACGCCGGCGCCACCACGTCAACCTTCGTTGCCCAGCAGTAACAGCGAAACACTGCTGGCCGAAAAGAATGCTGGATGTAATTTGGAGAGAAGTGGAACATCAACACCAAAGCGAAAAGAGGGGGCACGTGAATCTACACCATTGGACCTCTCGCTACGTCGTTCTCCCACCTCTTACACCAACCAGCAAAGGCAACGTGTACACTCGGCATCCTCCTACACAGACCCTGATCAACAACGTATGGATATGGAAACTTTACTGGAGGCGAGTAAGGAGAATCTGTCAATGGACGAAAGTGGCACAGTCACACCGGAACAGATCGTTTGCGCACCTTCACTACCGAACAGCCCTTCAATGAGTCCTTCACCGAAGCGACGCGCAATCAGCCCACGTAGTTCTGGTGCTGGCAGCACATCTTCCATGTCACCACCTGTAAATGTTTCGACCGCGTCTTTGGTGGCAGCCGCCGCTGCCGGTAATATGCTTGATTTACCATTACGTTCCATGTTACCCGCCGATCTGGCGCTAAAACTCTCCGAAACAAATATAATGAATCCACTGCTTGCCAAGCAAAATCTAGAACTTGCTTTCAAACTCTCTGCTGCAGCAGCGGCTGCGGTAAATAATAACTCACCAACTGGTAGTGGTTCGACAACTGCCGATTTGGCAGCAGCCGCCGTGGCAAAATCTTCACTGCTCGGTTTGCCGGTTTTAGGGAGCGCGACGACTGGAGGTAATAGCAGCAATATAGGCGGACCAAACAGTGCAGTGCAACCGCAGATTTATGTCAAGCAAGGTGTTTCCAAATGCAAAGAATGCAACATTGTATTttgcaaatatgaaaattatctGGCGCATAAGCAGCACTATTGCTCATCGCGCACCCAGGATAGTGGGGACGGTGAGGCGAAAGTGACAAACACATCTCCGATTGGAGTTAGTGCGGCTGCTAGCGGCGTAGAGACTGCGCCAGTTGCATATCAGCAGCTAATTTGTGCGGCCTGTGGCATCAAGTACACCTCTTTAGATAATTTACGAGCTCATCAAAACTATTACTGCCCCAAAGGAGGTGGCACAGCTGGAGCAGCTGCAGTGGCGGCTGCAGCAGCGGCAGCCGAAGCTGCGCAGTTACCATTGACCAAGGATAAGTGCGGCAAATGCAAGACGGTGCATGAAATAGGGCTGCCATGCCCACCACCGCCCGCACTGCAACAATCTCATAGCGGAGCGCAACATATGTCTAGCGCTACAAACGTCAACATGACAGCGGCATCGGCGATTGCGGTACCCAATCATAATGTCTATAAGTGCCCCGTTTGCGATGTTGTTAGTTTGACAGCCACAGAGAATAGGAAGCATATGGAGACGCATGGCACAGTAAAGGCATTCCGTTGCACCATCTGCTGCTACAAGGGCAACACGTTACGTGGTATGCGCACACACATTCGTATGCATTTCGATAAGAAGGCGACCGACATCAATGAGGAGCAATACATGACTTGCATACTGGAGGATGAGGGCATGGAAATTCCCAGCATTGCCTCTACGCTAAACCAAGAGCAATTAGCACAACAAATAGCTGctgtacaacaacagcaacagcaattgcAACTTCAagcacagcaacagcagcagcagcagcagcaacaacaacagcagcagcaaataTACAATTGCGATTTGTGTAATTACTCTTCCTCCTACAAGGGCAATGTGCTGCGTCATATGAAACTTGTACATCCTCATATCAACATCAACTCACCATCGATTTCACCTGAAGCTAATGATTTAGATGCCAGCGATGGGGCATGTTTGAATGGCGAGAATGGAAATTTCACCATAAAAACGGAACCACTCGAGCAGGCTGCCAATGCAAGTCTACCAAATTCAGCACAAATATTAGATAACAACAACTCAAGAATATTGGCTTCCACCTTGACGGCACCACCACCTCTAAATAGCTTGAATGAGGAACAAATGCCACATATAAAAACCGAACCGTTAGAAATTGGAGGCGAATCATCACTACCAGCAACCACACCACTACCAGCACTAAGCTCACCATCCATTGGACCACCACCACCACTCAATGCTGCCACCGACGAGAATACCACCGCTGCCGCGAACCAAAAATACTGTCAAACTTGCGACATCTCCTTCAActatttgaaaacttatttggCGCACAAGCAATACTATTGCAAGAATAAATTAAGACACCCCGAAGCCAACGATAGCCCTAGTCCCAATGCTGGACTCATGCCAATGTCGGTGGCATCGCCCAATTCGTTGCTGCTGTTGCAGAAGAACAAGGAGAACTTGCAGCAAGAGGCAGCCATTTGA
Protein Sequence: MKGEWEKIDPLTYSKDLSPTDLSDDQHHLENDDHRHEETDIEMEDDTGTREGYVRISTPTTNRISPVIRVENEVSRPPSTMASNESNSTDTFHTYNESTERKIELNIEPEKLQEQKHMSIESTSSNSNDKRPVSSSPHKDEPAGNGTPPVSSPTSIMPKLRLNALLASDPALKPDARDLKVLHEETQTKNRLAQLPPPPALTKQEDLETLMNAPGLFMCLPCGIHFSSPSTLEAHQAYYCSHRNKDMESDGASLSTVIAEKSAGMNANAASTSGSTSGAGAGNTSGEPNTKAIKTGKQYACTQCSYSADKKVSLNRHMRMHQTSPAHSSNAPPLNGAAALEEGVSSQQTDRYCSDCDIRFNNIKTYRAHKLHYCSSRRTEGQLTPKLEVSTANAIKAPTGAAAISPQTRTKTPTPAMVAAAAAAAAAAAASLQTTPPQPFLALPTNPILIIPCSLIRAASWIPGPLTSVSAGIPQPDNTCYMLDNGNLKPVATALNMSGLNPSVATSNNNSAAAAAASQMSNVETPAPPRQPSLPSSNSETLLAEKNAGCNLERSGTSTPKRKEGARESTPLDLSLRRSPTSYTNQQRQRVHSASSYTDPDQQRMDMETLLEASKENLSMDESGTVTPEQIVCAPSLPNSPSMSPSPKRRAISPRSSGAGSTSSMSPPVNVSTASLVAAAAAGNMLDLPLRSMLPADLALKLSETNIMNPLLAKQNLELAFKLSAAAAAAVNNNSPTGSGSTTADLAAAAVAKSSLLGLPVLGSATTGGNSSNIGGPNSAVQPQIYVKQGVSKCKECNIVFCKYENYLAHKQHYCSSRTQDSGDGEAKVTNTSPIGVSAAASGVETAPVAYQQLICAACGIKYTSLDNLRAHQNYYCPKGGGTAGAAAVAAAAAAAEAAQLPLTKDKCGKCKTVHEIGLPCPPPPALQQSHSGAQHMSSATNVNMTAASAIAVPNHNVYKCPVCDVVSLTATENRKHMETHGTVKAFRCTICCYKGNTLRGMRTHIRMHFDKKATDINEEQYMTCILEDEGMEIPSIASTLNQEQLAQQIAAVQQQQQQLQLQAQQQQQQQQQQQQQQQIYNCDLCNYSSSYKGNVLRHMKLVHPHININSPSISPEANDLDASDGACLNGENGNFTIKTEPLEQAANASLPNSAQILDNNNSRILASTLTAPPPLNSLNEEQMPHIKTEPLEIGGESSLPATTPLPALSSPSIGPPPPLNAATDENTTAAANQKYCQTCDISFNYLKTYLAHKQYYCKNKLRHPEANDSPSPNAGLMPMSVASPNSLLLLQKNKENLQQEAAI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00082516;
90% Identity: iTF_00082516;
80% Identity: -