Afra041570.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Anastrepha fraterculus
Gene Symbol
-
Assembly
GCA_037575425.1
Location
JAYXIM010057494.1:20798-24677[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 5.1 7e+02 2.3 2.0 3 23 572 593 571 593 0.94
2 8 0.00057 0.079 14.7 4.0 3 23 602 622 600 622 0.98
3 8 8.3e-05 0.011 17.4 0.2 2 23 645 666 644 666 0.96
4 8 0.024 3.3 9.6 0.2 1 23 673 695 673 695 0.98
5 8 8e-05 0.011 17.4 3.5 1 23 700 722 700 722 0.98
6 8 0.0013 0.18 13.6 1.4 1 23 728 751 728 751 0.94
7 8 2.9 4e+02 3.1 4.9 3 23 757 778 756 778 0.97
8 8 0.00034 0.047 15.4 0.4 3 23 830 851 829 851 0.97

Sequence Information

Coding Sequence
ATGGAGCAACCTTCAACGAAAAAAGCTAAAATCGAAGGTGCGCCTTCCGGTGTTATTATAATCGATCCTTCAGCTTTTTATAATCCAAATATTAAACAACCAAGAGAGCAATATATATTACCTCCCTTGGGTAAAGACTTCTTTTTGAAAACTCCTAAGTCAACAGCAAACGCAAAGTTACGCACGTTGACAACATTAGCGCTTCCACCAGCGATGGTTCAGGTTCCGCCGCTGGATATCACGCCAAACCAGaacacgaaaaaattaaatgcagttAGCCTAACCCCTACACCACGTCAGGCAGTAGATACGCCGCAATTTTCACAATCAAAAGAAATGAAACTGTTGGATAAACCGATACAACCTGGAAATAAAGCACTTGTAAAGCAATCCAACTCACAACCAAATAAGTCGGCAAAAGATATTACACAAAACCAACTTTCAAACCATTCCAATGAGCCTGCAAAACAGTCGACACAACAGCCAATTccaaaacaattaaatacacAAGCAAATCTATCAGCACATCAATCTCTGTTACCTTTAAAAATATCCAATCTACTGACTAAGGATCAAGCAAATTTACCATCTGAAAGAAGTGTGAAGCCAATGCACAATCATTCTAAATTTCAATATATCGAATTtattaatGAAGCTTTATTCGATAGCGAGGAAATTTCCAGAAACAAAGTTATTTCTGTAGCTGACTCTGACGATGAAGTCACAGCGCTTGAAGAGGAAACTTTTGAATATGTGTTACAAATACACAAAACTCACTCCGTTGCAACAGAAACGGAGGAAATTGAATACGCCTCAAACGGTGTTCAAACTGATGAAGCaacTGAAGATCGAATAAATTGTGGCTTcgtaaatgtttcaaaatatgggcctgacaaatattttaatcttCGTTGCTTTTATTGTGATGCAGAATATCCGATATCGTTTTGGTCTGAATTTTCAGATCATGTTATTGAAACTCATGGGGGTCTGGAAAAAGCTTTTGCCGAAAACAAAGCCAAGTCAATTACAAGTGAAATAAACGGCATCAATGATTCAGGTTCTAGTGATGGTGTAATTCAGGAAGATCTGCCACCAATAAATCTTTTCATCAATTTAATCGACAATGAGCGAAATCTTTTGCTACAATCACAAGAGCAACAGCCAAAACTTGCCGCACTCAAAACGCATGACGAATCTTTTAGAGAACTTTTACCGGAAGACTTCGACATTGGTGATGAATCAGATAGCGGGAGTGATGCAGAAAAATATTACATGAGTGTTGAAAAATATGATCCCAATGTAGATCACAATTACAGTCAAAACTGCCTGAATAGTACCATGAAACTCATGAAGAATGCCAAAGCGGTAGAtgagataatttttgataaaacttCGCGTGATATTGTGTTGGATTTCTTGGATCATTTAAAAGGCTTCCGCAGTTTATGGTATAGTCGTAGTAATGCCTCGCTAAGTTATGATAATGAACTACTAGATTTGATGGATATAATGACAGACAAATGGGGACTTAATCTGAAAAGAGGACGTTTACGtagaaatttggaaaatatcaaagCTTGGTTTATTGGTATGACCGTATCGAAGGAAGAAAGCGGTGATAAATTCTTTCAGCACAAATTTATTGAATACTATAACATATGCGCAGAATACCTGCCATCCGGAAATACAAGTAAACTACAAAAAGTTCTCTGTGATCTCTGCGATCGTTTTTGCTTTGATTTAATTGGCTTGCAGCTGCACAAATATCGAAAGCATAACATTGGTCAATTGCCATATGGGTGCAATAAGTGTGATAAACGTTTCGATTACGTACATAAGTTGCGAAATCATTTACGAAAGCATGTGGTGCCGCCGGTGGTTCGTAGGTATGTTCCACCGAAAAGTCTACCCGCACCTGAACCAGATTTAACTTGTGCCGAATGTAATGAAACCTTTAAAATCTGGTCTGATTTCAAAAGGCATTTGGAAATCCATCCTAAAGGTGATTGCCCTTATGTTTGCGAAGATTGCGGGAATCTGTTTAAAACTGTAGCTCTCCGAGCGGCACATCGGAAACGCCATCAAGAGCCTGCTTTTCAATGTGAGTtatgcccgaaaaaattttactttgcgTATCATTTTCAACAGCATATGAATGGTCATCGAggtattaaaaattatgtttgtgAATGGTGTGGCAAAATGTTCACacaccaaaaaatttttaaggaacATGTCCAGTATGTGCATTTGGGTCGTGGATTTTGTAAAATCTGTAATCGTTATTACAATAAGAGTTGCATATTTTCGAAACATTTACGTACAATGCATCGACCGCTAATCGGTAGCATTGAGGAATTAACAAAACGCCGTCGAGGCAGTTGCAAGGGTGGTAGCCGAAAGGGTAAAGGAACAGGGCCTCGCTTATCCACAAGGAAGTATACGTATGTGATAGATCCTGTTACGCAAAAACGTCGACTTTTATGCCCGAATTGTGATAAAAGCTATTACCAATATGACTCTTTATATTCACATGTTAAAAAAGTTCACGGCTGCTCGGTACCTGGTTATCACAAGCGAGTAACGGGGAACCAGAAATTGtcaaaaagttctaaaaaaaatactaagaaAGCTGTCCCCGACAAAGTTCTTAATACTGAAGCTGAAACAACGACTGCTGTTAATTcaattattgaaaattctaATACAAAATTCGACAATCCTATCGATCAGCGTACTTCCGTCGATCTAAGCTCGAGAGCTTGTACAACTACAGACGAGGAAAATTCAACGGGCGATAGTAGCCTCGTTGAAAACGATattaaaaatgggaaaaatgCAACATCAATgtcttttgaaaagtttattggTGAAATTGCTATAAGCAATAATTTTATTCTACAATCTCCAAGTAACTTACAACCAACTTTAATCGATGCTGAAGATAAATCTATAGGTGTATATGGACAATCACCGGAAAAAGCAGAGACAGCGTCAGAGCTCAAAATTGAGGACTATGGAGCTATCGATTATGAGTTTATTTTAAACGGTAGCTCCGTCCTAAATTTTTAA
Protein Sequence
MEQPSTKKAKIEGAPSGVIIIDPSAFYNPNIKQPREQYILPPLGKDFFLKTPKSTANAKLRTLTTLALPPAMVQVPPLDITPNQNTKKLNAVSLTPTPRQAVDTPQFSQSKEMKLLDKPIQPGNKALVKQSNSQPNKSAKDITQNQLSNHSNEPAKQSTQQPIPKQLNTQANLSAHQSLLPLKISNLLTKDQANLPSERSVKPMHNHSKFQYIEFINEALFDSEEISRNKVISVADSDDEVTALEEETFEYVLQIHKTHSVATETEEIEYASNGVQTDEATEDRINCGFVNVSKYGPDKYFNLRCFYCDAEYPISFWSEFSDHVIETHGGLEKAFAENKAKSITSEINGINDSGSSDGVIQEDLPPINLFINLIDNERNLLLQSQEQQPKLAALKTHDESFRELLPEDFDIGDESDSGSDAEKYYMSVEKYDPNVDHNYSQNCLNSTMKLMKNAKAVDEIIFDKTSRDIVLDFLDHLKGFRSLWYSRSNASLSYDNELLDLMDIMTDKWGLNLKRGRLRRNLENIKAWFIGMTVSKEESGDKFFQHKFIEYYNICAEYLPSGNTSKLQKVLCDLCDRFCFDLIGLQLHKYRKHNIGQLPYGCNKCDKRFDYVHKLRNHLRKHVVPPVVRRYVPPKSLPAPEPDLTCAECNETFKIWSDFKRHLEIHPKGDCPYVCEDCGNLFKTVALRAAHRKRHQEPAFQCELCPKKFYFAYHFQQHMNGHRGIKNYVCEWCGKMFTHQKIFKEHVQYVHLGRGFCKICNRYYNKSCIFSKHLRTMHRPLIGSIEELTKRRRGSCKGGSRKGKGTGPRLSTRKYTYVIDPVTQKRRLLCPNCDKSYYQYDSLYSHVKKVHGCSVPGYHKRVTGNQKLSKSSKKNTKKAVPDKVLNTEAETTTAVNSIIENSNTKFDNPIDQRTSVDLSSRACTTTDEENSTGDSSLVENDIKNGKNATSMSFEKFIGEIAISNNFILQSPSNLQPTLIDAEDKSIGVYGQSPEKAETASELKIEDYGAIDYEFILNGSSVLNF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00083463;
90% Identity
iTF_00082499;
80% Identity
-