Basic Information

Insect: Anastrepha fraterculus
Gene Symbol: SCRT1
Assembly: GCA_037575425.1
Location: JAYXIM010007618.1:174218-185368[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 3e-07 4.1e-05 25.1 1.6 1 23 533 555 533 555 0.99

2 5 0.0005 0.069 14.9 0.4 2 23 565 586 564 586 0.98

3 5 1.2e-05 0.0016 20.0 0.5 1 23 590 612 590 612 0.97

4 5 7.3e-08 1e-05 27.0 0.6 3 23 620 640 618 640 0.98

5 5 0.00021 0.029 16.1 1.2 1 21 646 666 646 667 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	3e-07	4.1e-05	25.1	1.6	1	23	533	555	533	555	0.99
2	5	0.0005	0.069	14.9	0.4	2	23	565	586	564	586	0.98
3	5	1.2e-05	0.0016	20.0	0.5	1	23	590	612	590	612	0.97
4	5	7.3e-08	1e-05	27.0	0.6	3	23	620	640	618	640	0.98
5	5	0.00021	0.029	16.1	1.2	1	21	646	666	646	667	0.94

Sequence Information

Coding Sequence: ATGCCTCGCTGTTTAATGGCTAAGAAATGGAAAGCATATCCTTGGCTCGATCGTATTGACGACACGCAAGCAGCCACAGGTGAGGCTACCGTAAAGGAGTCCCAGGAGCCTAGTGTAAACATCGAATTGGTGCCTAAGCATAGTGTTGCACGTTCACCAAGTCCGAGCAGCACACAACAATACAGAAGATCATCAAAATCGCGTCGTTCTACTATAGATGATGATGAGGAAATCGATGTAGTGGGGGATAATGCGGCAGCAGTAGCAGCTCTTGCTGGCGTGATTGGTACAACTGTAGCAACAGCtactgaaatacaaaataacGGTAAAGCTGATCTATCAGTCCAGCGCACAATTCCGACAGCTGCAACAACCACTTCGAATACGTCTGGCAGCAGTAGCAGCATCGGACCAACACCCACGGCTACGTGCTGGGGTCCTTCATCGCCGACGGCGGGTGCTACAGCTCCGAGTCCACCACCGCACTCACCCGAGGCGGCAACTCGAGGTGCAACAGCGCTGTATAACGGTTTTGGACATGACACTTCACCCATGCACTACACAGCGTACCTGCCCAGAATGGAAAACGGTGAAGTTACTGTAATTACGAATGCCGGTGCAGCCGTTGCGgcaactgctgctgctgctgtcgttACTGGCCATCACAATCTGCCGTTACCGCATACGCCCCATCATTATTCGTCATTCGTACACACACCGCCGCCTTCGACCGCTTCTTCGCCCTCAGCATCTCCGTCGAGTCATTCCAGTTCGGTGACAGCGTCCAACAACAGCAGTAACGACCGCCTTAGTCCGCCCATACGCATTAAGTCAGAGTCGCAAAACGATGACCAATTTCAGCACAACATTCAGACGAGTTCCGAGTCGAGCGCATTGCGGAATAAATCGTTGGCTATGTGCTTCACCAGCACTGGCGCTGCACTATCGCTCCCTCCAAAAAAGAAGGACATTTACCGGCCATATTCGCTTGATGATAGGCCAAGTGTGGAACGTTTGCGATCCCCATATGAGAGTTTGCGTATACCAGCTGAGGAGGATTTGCATGCTGCTCACGCAATACTCGATTTGAGTGCTTCCACAGCCTTCCATCCGCCAACACAGCCACATCAACTACAGCACGTCCAGCAACTACAACATCCACCCTCGCCGCCGTTACAACTCCACCAGTTGCACCATCACCAGCATCCGCTGCACCACGTAACTCACGCCATTcagttgcaacaacaacaggaagTGGCACATCACAATGGCCCATCCATTGCGGATTTGGCAGCAGCAGCTAGTGTGGCAAACGAACAGCGGCCAAGGAGTACCGCTTCTATAAATAGTATGTTGAGCGCAACTGATAGTGACCGACAGCCATGTTCGCCGGCAAGCAGCGTCCAAAATGAAAACAGCAATACAACCAACCAGCTGACATCTATCCAATCGCCCACGGGTGGTTGTGGAAACAATGGTTCAAATAAGACCGTGGCCTATACCTACGAAGCCTTTTTTGTAAGCGACGGTCGCTCGAAGCGCAAACATGTAGCCGATCCCGCGGCTATAGTACAGCAAGATCAGCAGAAGGCCAAATATACATGTACCGAATGCGGAAAACAGTATGCCACGTCGAGTAACCTTTCGCGCCACAAACAGACACATCGTTCACTCGATTCGCAGTCGGCGAAAAAGTGCCACACCTGCGGCAAAGCGTACGTCTCGATGCCGGCACTTGCGATGCATTTGCTTACGCATAAACTATCGCACAGCTGCGACGTTTGCGGCAAACTTTTTTCGCGCCCCTGGCTTCTACAGGGCCATTTGCGTTCGCACACTGGTGAAAAGCCATATGGCTGCGCACACTGCGGCAAAGCATTCGCAGACCGTTCTAACTTAAGAGCGCACATGCAGACACACTCGATCGATAAAAATTTCGAGTGCAAGCGCTGCCGTAAAACATTCGCGCTCAAGTCGTACCTCAATAAACATTTAGAGTCCGCGTGCCTCAAAGACGAAGCGGACATGCAGTTCGACAGCGCTAGTGAGTCCAGCAACGGCATGGTGTCCCCACCACCCTCCCTAGAAGACTATCCACTGACGCCGCCGACGCCGCAGCAGCGACGATACATCAGCACTTCGCCAACACCGTCGGCGGTAAAGATTGGCAGTATAAGTGCGCTTACGATACCAACGCCCGTAGCAGCAGCCGCGGCGGCAGCAGCTAAAATTGTGAAGGTAGAAGCGACCTTCGTCGGCTAA
Protein Sequence: MPRCLMAKKWKAYPWLDRIDDTQAATGEATVKESQEPSVNIELVPKHSVARSPSPSSTQQYRRSSKSRRSTIDDDEEIDVVGDNAAAVAALAGVIGTTVATATEIQNNGKADLSVQRTIPTAATTTSNTSGSSSSIGPTPTATCWGPSSPTAGATAPSPPPHSPEAATRGATALYNGFGHDTSPMHYTAYLPRMENGEVTVITNAGAAVAATAAAAVVTGHHNLPLPHTPHHYSSFVHTPPPSTASSPSASPSSHSSSVTASNNSSNDRLSPPIRIKSESQNDDQFQHNIQTSSESSALRNKSLAMCFTSTGAALSLPPKKKDIYRPYSLDDRPSVERLRSPYESLRIPAEEDLHAAHAILDLSASTAFHPPTQPHQLQHVQQLQHPPSPPLQLHQLHHHQHPLHHVTHAIQLQQQQEVAHHNGPSIADLAAAASVANEQRPRSTASINSMLSATDSDRQPCSPASSVQNENSNTTNQLTSIQSPTGGCGNNGSNKTVAYTYEAFFVSDGRSKRKHVADPAAIVQQDQQKAKYTCTECGKQYATSSNLSRHKQTHRSLDSQSAKKCHTCGKAYVSMPALAMHLLTHKLSHSCDVCGKLFSRPWLLQGHLRSHTGEKPYGCAHCGKAFADRSNLRAHMQTHSIDKNFECKRCRKTFALKSYLNKHLESACLKDEADMQFDSASESSNGMVSPPPSLEDYPLTPPTPQQRRYISTSPTPSAVKIGSISALTIPTPVAAAAAAAAKIVKVEATFVG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00083420;
90% Identity: iTF_00083420;
80% Identity: -