Basic Information

Insect: Anastrepha fraterculus
Gene Symbol: SCRT1
Assembly: GCA_037575425.1
Location: JAYXIM010027632.1:27523-49875[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 2.3e-07 3.2e-05 25.4 1.8 1 23 551 573 551 573 0.99

2 5 0.00068 0.094 14.5 0.1 2 23 583 604 582 604 0.98

3 5 6.3e-06 0.00087 20.9 0.5 1 23 608 630 608 630 0.97

4 5 4.9e-09 6.8e-07 30.6 0.8 1 23 636 658 636 658 0.98

5 5 0.0001 0.014 17.1 2.2 1 21 664 684 664 685 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	2.3e-07	3.2e-05	25.4	1.8	1	23	551	573	551	573	0.99
2	5	0.00068	0.094	14.5	0.1	2	23	583	604	582	604	0.98
3	5	6.3e-06	0.00087	20.9	0.5	1	23	608	630	608	630	0.97
4	5	4.9e-09	6.8e-07	30.6	0.8	1	23	636	658	636	658	0.98
5	5	0.0001	0.014	17.1	2.2	1	21	664	684	664	685	0.94

Sequence Information

Coding Sequence: ATGTCCGTCGATTGCATGCGACCTTCAAGCAATAAAATCATAATCACACCAGGTGTCACACTCTGCTATGCTCAAAATACATCAGGATGGCCGCCACATCAGCAGACTCGATCAACTAGTCGGCAACTGGCGTCTGTGAGATCACAACGACCACCAGTAAGCGCAACGAGTAAAGGAAGGCATATAGTAACGCCGAAAATACCCCCAACGCTTCCAAAGCAACAGCCCACGATTTTAGTGGTTCGAAAAACAGGTGCAGTGAAGCCTTCACCAATACCATCATTACAATCAAAATCTAAATTGGCATCACTTCCGCCATTATCGCGGAGCACACCAAAGCGAAGCAATTCTTTCAGGGGAGGGAGTGGTAGCAATCAGAAACAGACAAATGGCCCAGTTAATGGTGATCGCATTGATTTGGAATTGGACGGTGCAACAAGTGATTTGGAAGTCTGTAAACGACTCGAATGGTCGGCCGCACAATCTTTAGTCGAAATGAAtgcgaaagaaaaacaaagacgCAGTGCCGCTACAGCACAATCGGCCACAGAAAGAAAACCGTTGACTACAATGGAAGTTCCGGAGACAGTATTAGTGGAAGCGCCAATTTCTGGAACTGTATTGAATGGTCTAAATTCACATGACAACGGAGATATTGCAAAGCTGGAACAACGTCGTAACGTAGTTAATTGGAATGCCAGGCATAACAACTCCAACACCTCTAATACCAGCAACATCTCTCATTCAACCCCTGGCGGTCGTTCGCCCACAGAAGATGGAAAAGTTATATTCTATGCACCACCTGCAGGCGGCCTCAATACCAGTCAACCTTCGAGTCACACGCCATCGTTTATGATCAAACAGGAACCAACATTGCCGGCATTTTATCGCGAACGCAGTATCGAGGAGACCGAAGCAGCCCACGATCTACTTTCACTATCGCAAAGTCTACCGCCATTAACCCCGCCTTGTGTCGTCACTATCCTGCATCAGGAGTCGTCAACTAACCACAACCCCAACAGCACAGCGCACCATCAAAATCAACTCCAACaccaaacacaacaaaaacccaTCATGCATGAGATATCCAGTGCTTCCAAACAGCAGAGAGTCGTTCCCCCACCACTCTGTGCTGCCACAATTGCCGCGGATAATTTTACCATATTCACTGTACAAGAGGTCCCAACGCCGCCACACACGGCAGCGTCCCTTGGCCAAGGCCCGCCAAAAATACGTTATATAACCAGTGGCAACAGCAACTCATACGACAGTCACACAGGCGCAAACACGCCTGATCACTCAGAAAACTGCTCGCCGTTAACTCCACCAAATTCAGATCATTCATCCGATATTGACATCGATATGTCATCCTCCTCGGACTCGGGCCACTCTAACTCGAATTATCAACCAACACTTAAGTTGTGGATCGATGAGCCAGGTGCATACAAGACACGACGTTCTTCGACAATGCCAACTGAAGAAGCATCCGATGCAAAAATAAGTCATTCCGACAAACTCGGCCTTAATATATTGGATGGTCGCACCAAAGCGAGCCGCTGTGGCAAAGAACCAATAGAATCACATGCAGTTGGTACTTTTGACTCCAACGTCACAAACACCGACTCCTATGTGAAAAAGAAACGTGGCAGCTACAAATGCTCTGAGTGCGGCAAACAGTACGCGACTTCTAGTAATCTTTCACGCCATAAGCAAACGCACCGCTCGCTCGATTCTCAATCggcaaaaaaatgcaatacttgcGGCAAAGCATATGTTTCCATGCCAGCTCTTGCCATGCATCTACTGACCCACAAACTTTCGCACAGTTGCGACATTTGCGGGAAACTATTTTCACGACCATGGCTGCTACAAGGTCATCTACGCTCACACACCGGGGAGAAACCGTATGCTTGCTCGCACTGTGGCAAAGCCTTCGCTGACCGTTCCAATTTACGAGCCCACATGCAAACGCATTCGAtcgacaaaaattttgaatgcaaACGTTGCCACAAAACATTCGCTCTGAAGTCTTACCTAAACAAGCATCTGGAGTCATCATGTCTCAAGGATGTCATGGGTATCGAAGACGCAGCAGATTTGTACGGGGGTAATAGCACAGGCGATAGAGGCAAAGGCGAAGAAGGCGAGTCACCAACCGTTCAAAGCAGTGATGACAACGACGAAGATATTGTCGTAGCATAG
Protein Sequence: MSVDCMRPSSNKIIITPGVTLCYAQNTSGWPPHQQTRSTSRQLASVRSQRPPVSATSKGRHIVTPKIPPTLPKQQPTILVVRKTGAVKPSPIPSLQSKSKLASLPPLSRSTPKRSNSFRGGSGSNQKQTNGPVNGDRIDLELDGATSDLEVCKRLEWSAAQSLVEMNAKEKQRRSAATAQSATERKPLTTMEVPETVLVEAPISGTVLNGLNSHDNGDIAKLEQRRNVVNWNARHNNSNTSNTSNISHSTPGGRSPTEDGKVIFYAPPAGGLNTSQPSSHTPSFMIKQEPTLPAFYRERSIEETEAAHDLLSLSQSLPPLTPPCVVTILHQESSTNHNPNSTAHHQNQLQHQTQQKPIMHEISSASKQQRVVPPPLCAATIAADNFTIFTVQEVPTPPHTAASLGQGPPKIRYITSGNSNSYDSHTGANTPDHSENCSPLTPPNSDHSSDIDIDMSSSSDSGHSNSNYQPTLKLWIDEPGAYKTRRSSTMPTEEASDAKISHSDKLGLNILDGRTKASRCGKEPIESHAVGTFDSNVTNTDSYVKKKRGSYKCSECGKQYATSSNLSRHKQTHRSLDSQSAKKCNTCGKAYVSMPALAMHLLTHKLSHSCDICGKLFSRPWLLQGHLRSHTGEKPYACSHCGKAFADRSNLRAHMQTHSIDKNFECKRCHKTFALKSYLNKHLESSCLKDVMGIEDAADLYGGNSTGDRGKGEEGESPTVQSSDDNDEDIVVA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -