Afra038512.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Anastrepha fraterculus
Gene Symbol
-
Assembly
GCA_037575425.1
Location
JAYXIM010052668.1:79746-103555[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.0024 0.33 12.8 0.2 1 23 467 492 467 492 0.97
2 12 8.5e-05 0.012 17.3 2.4 1 23 497 520 497 520 0.94
3 12 3.3e-05 0.0046 18.6 1.6 3 23 527 547 525 547 0.97
4 12 0.15 21 7.1 4.7 2 23 554 575 553 575 0.95
5 12 0.00023 0.031 16.0 2.2 3 23 584 605 583 605 0.95
6 12 0.019 2.7 9.9 1.0 1 23 611 634 611 634 0.93
7 12 0.068 9.4 8.2 1.2 2 23 645 667 644 667 0.95
8 12 0.00021 0.029 16.1 0.1 1 23 697 719 697 719 0.97
9 12 0.00026 0.035 15.8 1.4 1 23 726 750 726 750 0.97
10 12 0.00037 0.051 15.3 0.2 2 23 757 778 757 778 0.97
11 12 0.0092 1.3 10.9 0.4 1 23 785 807 785 807 0.98
12 12 0.00036 0.05 15.3 3.7 1 23 813 836 813 836 0.98

Sequence Information

Coding Sequence
ATGGAGACATGCAGGACCTGTGCGAGATGTGATTTTGAGGACGAAACCAAATGGTTCGATTTATTCCACACAACGCGCTGTAAACGTGAAATCGAAGAAATGCGTGTGGAGTTCAATAACTGGCAATTGcagATCTCACCCAACGACGGCCTGCCGCAGAAGATCTGCTctgattgtttttcaaaattttgcaatgtGCTCACATTTCGTTTGCAATGCCAGCAAGCGcaagtgaaattaaataatattttcgataaaatcGAAACGCAAAGCATGGATGACGACCGATTTGATGATAATCTGGAAGAATTAAGTGCACAACTGCTGCGGATTGTAGAAGAAAACGCACGACAAATAACGAATTCAACGAGTAACGAAGAAATCTGCCAAGCAGATGATTGTGCTGCCGCTGCCGTTGACGATGTTGTTTCGGCGAATGCTACCCCTTCAGCTGCTGCTATTGTGATGTTGGATATGCTTGATGAAAATAGCACTAATAACTACTCCGCCGTGTCCGCCTCCGCCGCCGGTGGAGAGTGCGGAAAAGACGGCGCACAGCTGGTTGATGCAGTTTCATCAGGTCAAACCGAGGTTTCAACTAAAACAATCGAAGACACCGTCTTAGCAAAAACAATGCCTATAACAAATGAGAATACCGCAATCGCTGCCGCTATAACACAAACTAACTTTTACACTGCCGGCGTTGAATGTCAAAGTGAAGCGGAAATGCATGTGGCAAATGTGACGACTGATACCGTTACACCAATGACGGTCCACAAAGAGGACGTAAAGGAATTAGTAGAAGAAGGAAACAAAGTCGAGAccgaagtagaagtagaagaagaTGATGATGTCGTCCAAGGTGAAGTGAATGTAAACGAGCAAATTCATTTGCATGTCGATGATATAATTGAGGAAGATTTCACACTCGACGAAACACTTGCGGAGGAGGAAGAGGAAGCGGAGGAAACAGCGGTAACTACAGCCGGACTGTTGGACCATGACACTGCTCATACTGACTGCATTGTAACCGATATAAGCGAAGATCTGGCACAGTCTGAAGGTTATGCCGAAGAAAGTGTGCCTTTTGCGGATGCCGTTGAAGATGAAGACGATGATTATGATGAGGATGAAGGTGTGTTGGAAGCATTCGAACCGGTTACACTTTCAACGAATACCTAcaatacaaacaacaacaccataTTAGCATCACAATATGTCTTTCAAATGTCTGCCATCAACAATTGCTACAACACAACACTGGGCCAACAACAGGAAGTCAGCATTGTTTTCGAGTGTAAATACTGCCTGAAAACTAAAGATATGCCAAGTACGCATTTTGAGACACAACAGGCTCTACTCGAGCACATAACCAATACACACGATGCTGAATACCCATTTACATGCCCACAACGCGGTTGCACAGAGGGTTTTCGCGACGCCGCCTCACGCACGGTTCACATGAAAAGCGAACATGTGGCCAAACATTATGAGTGTGATGTGTGCGGCAAAAAGTATGCCGATCGCTTCAATttgcggcatcacaatgagaAGTTCCACAGCGAGACGGATTTTGGCTGTGACACATGTGGCAAGCGCTTCTATTCGCGTAAAAGTCTTAACTATCATATGAAATGGCATAATCCGGAACTATTGTTGCAGTGTAGCCAATGCGATCGGCTGTTCATCAATCAGCGGCATTTGAAGTGTCACGAAGAGACGCACAACGGGGTGAGGAATAGTGAACCCTGTACCTTTTGTGGAAAAACTTTCATACATTTGAAAACTTTACGTTGGCATTTGTATCGGCAACATGGCGGTGAAAAACCATACAAGTGCGGTCATTGCACTGAGGTTTTCGCCTCTTATTTGGAGAAACGCATTCACATGTTGGATAATCATTTGGAAAACCTCACCACCATCGAACGAACCGAATGTATGCTCTGTCGCCAACGCTACGAAGATGAACACGAGTTAAGCGAACATATACGCAACAAACATATTGAACGCCCAAAATCATCGGTGTTGCTCATAGCCAACAATAAGCGAGTGGTGCGTAATAAACGGCAAAAACACTATAGTGGCATCTTCCAGTGTGAAATTTGCGCGCAGCGTTTCAATATGAAGTCAGCATTGGAACGACATGCGGCAGTACATTCGAGCATTGGACGACCTCACAAATGTCCGGTTGAGTCCTGTGCGAAGCGTTTCAAGCGTGCACAGGATATGAATTGGCACATGAAGACGCATTCGAATGAGAAGCCGAATGTGTGCGATGTGTGTGGCAAGGGGTTCGCGCTTAAATATGTGCTGAATCAACACAAGCGGAGTCATGAAGTTCTTGAGAAGAATTTCAAATGTATGATCTGTGGACGTGCCTATCTCTTCGAGAAATCACTTCGTGTGCACGAGCGTGTACATACTGGCGAAACTTATTACCGTTGCGATCTGTGTGGCGAAAATTTCGTAACACATATGAAATTCAAAACTCATATGATGAAAAAACATGACCCGAATACAACAAATTTAGACGAGCACAATATTGACGTTTTTGATGAGCAGCTGCGTGAACCTTAG
Protein Sequence
METCRTCARCDFEDETKWFDLFHTTRCKREIEEMRVEFNNWQLQISPNDGLPQKICSDCFSKFCNVLTFRLQCQQAQVKLNNIFDKIETQSMDDDRFDDNLEELSAQLLRIVEENARQITNSTSNEEICQADDCAAAAVDDVVSANATPSAAAIVMLDMLDENSTNNYSAVSASAAGGECGKDGAQLVDAVSSGQTEVSTKTIEDTVLAKTMPITNENTAIAAAITQTNFYTAGVECQSEAEMHVANVTTDTVTPMTVHKEDVKELVEEGNKVETEVEVEEDDDVVQGEVNVNEQIHLHVDDIIEEDFTLDETLAEEEEEAEETAVTTAGLLDHDTAHTDCIVTDISEDLAQSEGYAEESVPFADAVEDEDDDYDEDEGVLEAFEPVTLSTNTYNTNNNTILASQYVFQMSAINNCYNTTLGQQQEVSIVFECKYCLKTKDMPSTHFETQQALLEHITNTHDAEYPFTCPQRGCTEGFRDAASRTVHMKSEHVAKHYECDVCGKKYADRFNLRHHNEKFHSETDFGCDTCGKRFYSRKSLNYHMKWHNPELLLQCSQCDRLFINQRHLKCHEETHNGVRNSEPCTFCGKTFIHLKTLRWHLYRQHGGEKPYKCGHCTEVFASYLEKRIHMLDNHLENLTTIERTECMLCRQRYEDEHELSEHIRNKHIERPKSSVLLIANNKRVVRNKRQKHYSGIFQCEICAQRFNMKSALERHAAVHSSIGRPHKCPVESCAKRFKRAQDMNWHMKTHSNEKPNVCDVCGKGFALKYVLNQHKRSHEVLEKNFKCMICGRAYLFEKSLRVHERVHTGETYYRCDLCGENFVTHMKFKTHMMKKHDPNTTNLDEHNIDVFDEQLREP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00083344;
90% Identity
iTF_00083344;
80% Identity
-