Basic Information

Insect: Anastrepha fraterculus
Gene Symbol: -
Assembly: GCA_037575425.1
Location: JAYXIM010037216.1:66709-67888[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.1e-05 0.0016 20.1 1.2 1 23 117 140 117 140 0.97

2 8 4.9e-05 0.0068 18.1 0.6 1 21 149 169 149 170 0.96

3 8 0.00033 0.045 15.5 3.7 1 23 180 203 180 203 0.95

4 8 5.8e-05 0.0081 17.8 0.4 1 23 209 231 209 231 0.98

5 8 4e-07 5.5e-05 24.6 4.5 1 23 237 259 237 259 0.98

6 8 0.00046 0.064 15.0 4.7 1 23 263 285 263 285 0.96

7 8 1.6e-05 0.0021 19.6 4.0 1 23 291 313 291 313 0.98

8 8 0.00041 0.057 15.2 2.1 1 23 319 342 319 342 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.1e-05	0.0016	20.1	1.2	1	23	117	140	117	140	0.97
2	8	4.9e-05	0.0068	18.1	0.6	1	21	149	169	149	170	0.96
3	8	0.00033	0.045	15.5	3.7	1	23	180	203	180	203	0.95
4	8	5.8e-05	0.0081	17.8	0.4	1	23	209	231	209	231	0.98
5	8	4e-07	5.5e-05	24.6	4.5	1	23	237	259	237	259	0.98
6	8	0.00046	0.064	15.0	4.7	1	23	263	285	263	285	0.96
7	8	1.6e-05	0.0021	19.6	4.0	1	23	291	313	291	313	0.98
8	8	0.00041	0.057	15.2	2.1	1	23	319	342	319	342	0.96

Sequence Information

Coding Sequence: ATGGAGCTTAAACCGGTGGACACTAAACCGGCGGTTGAAACCATTTTTGTTCCTGGATGTCCAAACATTAAGACGCAGGTGTCTGATCGAAAAATagtgaaacaacaaatttttgttgcaaatttacCAGTAATAACAGAGCCGGACATTGTACCCAAAACTGAACGCTCATCAGATAATGATTGCGAACAACAGAATACTGAGTTATTAAGTCAGGATAATAGCACTAGTAGCTATGAAGATTTTGGAGAAGAGCTAAATAAAAATCCCATTCGTATCACAAACAAAGCAAATGAAAACCCCCAAAAGCGTAAAAGAGCATCCGAAAAAGTCTTAATAGATCCCAAGTTCGTTTGCAAAATCTGTTCAATGGGATTTCAGCGTGCTAGCAACTATACaattcatatgaaaaaaaagcataaaattgtTGGAGTAGCAACTCCTTACAGTTGTCCCAATTGTCCTCGAAAGTACGAATTTGAGTACGAGTTGAAACGTCACATGCAAAAGTATCGGCCGCTTGAAGAAAGACTAATTTTTCCTTGCTCACACTGTGATAGAAAATTCCAAACAAGAGTTCATGTGGCTCGGCATATCAAGTTTGTTCACGAAAACATACGTCCGTTCATTTGTGAAGAATGTGGCGAAGCTGTACATACAAGAACAACCCTACGGGAACATATGCTCACACACACGGACTACTCGCCATTTGAATGTAAAGAATGTGGAAAgtgttttaaacaaaaacaacgactGAAAAGACACATGGATATTCATGGAGAGAAacatatttgtacaaaatgtgGCAAGCAACTGAGTTCTAAGTGCACACTTAATAAGCATTTACTGGTTCATTCAGAAGGAAAGCCGCACAAGTGTAAATATTGTGGACGTGCTTTCAAGCTGACCAAAACTCTGAAAGTACACTTAAATACTCATACGGGTGATAAGGTCTATGCATGTGATTTTTGCGATAAAACATTTTCTGCTCCTTCGAGTCGACGtcaacacaaaaagaaaaaacatccAGAGAAATTGCTTGAGCTGGAAGCGTTGGCAGCAGAAAACGTTGAAATAAAAGATGCACCCAGTTTAGACACATTACAGGCACTGTGa
Protein Sequence: MELKPVDTKPAVETIFVPGCPNIKTQVSDRKIVKQQIFVANLPVITEPDIVPKTERSSDNDCEQQNTELLSQDNSTSSYEDFGEELNKNPIRITNKANENPQKRKRASEKVLIDPKFVCKICSMGFQRASNYTIHMKKKHKIVGVATPYSCPNCPRKYEFEYELKRHMQKYRPLEERLIFPCSHCDRKFQTRVHVARHIKFVHENIRPFICEECGEAVHTRTTLREHMLTHTDYSPFECKECGKCFKQKQRLKRHMDIHGEKHICTKCGKQLSSKCTLNKHLLVHSEGKPHKCKYCGRAFKLTKTLKVHLNTHTGDKVYACDFCDKTFSAPSSRRQHKKKKHPEKLLELEALAAENVEIKDAPSLDTLQAL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00083289;
90% Identity: iTF_00083289;
80% Identity: -