Basic Information

Insect: Anastrepha fraterculus
Gene Symbol: ham
Assembly: GCA_037575425.1
Location: JAYXIM010002759.1:1-31914[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.12 17 7.4 0.2 2 20 39 57 38 61 0.79

2 9 0.0032 0.44 12.4 1.9 1 23 68 91 68 91 0.92

3 9 1e-07 1.4e-05 26.5 1.0 1 23 97 120 97 120 0.96

4 9 1.5e-06 0.0002 22.9 1.7 1 23 126 148 126 148 0.95

5 9 3.7e-05 0.0051 18.5 5.0 1 23 154 176 154 176 0.99

6 9 0.00017 0.024 16.4 1.1 2 21 184 203 183 204 0.95

7 9 5.8e-09 8e-07 30.4 1.3 1 23 691 713 691 713 0.99

8 9 3.1e-07 4.3e-05 25.0 0.9 1 23 719 742 719 742 0.97

9 9 5.3e-05 0.0073 18.0 6.6 1 23 748 770 748 770 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.12	17	7.4	0.2	2	20	39	57	38	61	0.79
2	9	0.0032	0.44	12.4	1.9	1	23	68	91	68	91	0.92
3	9	1e-07	1.4e-05	26.5	1.0	1	23	97	120	97	120	0.96
4	9	1.5e-06	0.0002	22.9	1.7	1	23	126	148	126	148	0.95
5	9	3.7e-05	0.0051	18.5	5.0	1	23	154	176	154	176	0.99
6	9	0.00017	0.024	16.4	1.1	2	21	184	203	183	204	0.95
7	9	5.8e-09	8e-07	30.4	1.3	1	23	691	713	691	713	0.99
8	9	3.1e-07	4.3e-05	25.0	0.9	1	23	719	742	719	742	0.97
9	9	5.3e-05	0.0073	18.0	6.6	1	23	748	770	748	770	0.98

Sequence Information

Coding Sequence: TCTCTCTACAGTGGCGGCAACACTACTGGCGACGACGAATACAATAAGGAGCGTTCGTTTAGCGAACAAGTGGATGGCATTGATTTGACCGACGACGAAAACGGTTTCGATATACGTTGTGAAGTTTGTGATAAAACCTTTCAAGATTTGGAAATTTTGGACCATCATTTGGTAGCTAAACATTCATTTCGAAAAGACGATTTTGCCTGTGAATTGTGTAGCAAACCCTTTTGCCATCGTCCTTTATTACTGAAGCATCGCGCCTTGGTACATAACGACATACGAAAGTATCCCTGTGAGAATTGCACAaagGTATTTTGTGATCCATCGAATTTACAACGGCATATTCGTGCCAACCACATCGGTGCCAGAAGTCACGCGTGTCCGGAGTGCGGAAAAACATTTGCGACATCGTCCGGCCTCAAGCAGCACACGCACATCCATTCGTCGGTGAAGCCGTTCCAGTGTGAGGTGTGCTTCAAGGCGTATACGCAATTCTCGAATTTATGCCGTCACAAGCGCATGCACGCCGATTGTCGCATGCAAATCAAATGCAATAAGTGCGGACAGAGCTTCAGTACGGTAACATCGCTATCGAAGCATAAGCGTTTCTGTGACTCCACCAGCGTGTCAACGCTACCACCACCGCCTGTGTCTGCCGCATCTGTTGCATCAGGTGTCAACTTGCCGCCACATTTACCGTCGCAACAACAGCAAGCCATGCAGTCACGTGTCGCTGCACTGCAATCGATGAACGCCGCTGTGGCTGCTGCTGCAGGGAATGTCAATGGTGCCGGAGCTGGACTACCAGGCGCTGGGATGCCCGCATCAGCCCATCCATTCCTGCTCTTTCCTACGCAGCCATTCTTTCCGAATTTCCCAGCCGCTGCCGCCGCCTATGGATTGCAAAGTATATTTCCGGGAAGCCCCGCACAGGCCTCGAACTTTCCGTTCCTGTTTCCGAAAACAAATCTGGATATGCGTATGCCAGGCATGCAGACGACAAGCAACCATAATGCACCTAGCAGTTTACCGTCGCCGAAAGCAATGCGACAGCaacttaattttgctttcggCGAAAATATGCGCGCTGGCGGTGGCTCGCCATCCAGTGAGCATAGTCAGAAGCAGTCGAATAATAATACTGAAAGAGATCACGTGAATGATGCAGAAGAGGATCTGAAAACTGCCATGCCACTTGGCTTGGCGCTCGCCTGCAATTCGCCCAATTTCAACAACCGTAGGAGTTTTTCGCCACGAAATCACTGCGATGAGGAGAATAGCTCGTCGGTGGAATTGAAGGTTTCGCCCAATGAAGACATGGACGAGCCAGAGGAGATGCCAACATTTGAGAGCAATACTTGCAAACAAACAGAAGACGATAAGaAATCGATTGACATTATTAGCACACCACCGCCGGCTGAAGCGTCTGACGAAGAAAACAGTAAGCCCACAAATAGCGCCGCAGAGTTGCCACTCGACTTGAGTATAACGCGCAAACGTGCGCGCACCGCTAGTTGCAGCACTAGCGCAGATGCACAGTCGATACATAGCGATCTCCCCAATCAGGCTGAGCAGAGCGAGCATAAATTCGTATCCGAGCTGCGGCAGGAATCCAACTCATCACGCAACCACAGCAATGGTGCTACACCAGCCAAGCAACAACGTCCATCACTCAACTCATCACGCCTCTCCTATCAGAGTAGTCGTACACCATCGGTTACGGCCTCACCTGGACCGACACCTTCACCCTCGCCACCTCGTAACGAGCCAGCCAACTTGCATGCCACGGACGCTAATTCCTCTGCCACAAATGGCATCTCTTGCCCACAACCGATGCATCCACATCCCCTACTCATGGATGAAATCTATCGTACACGTGCCCTGAGCGCCGCATTCCCACGGCCGTTTCCTTTTTTAGGCCCAATGGGCGGACGGCCAGCCTATGAGGGTGCACTGCATCGCGCTGGCATGCCGTTTCCGCCCGAACCGGCCTTCCGTGAAGTGCTACGAGCTGCTGGCCTCACTGGTAGTATGTTAGCCACAGCCTCAGGTAAAATCAAAGAACGCTACACTTGCAAATTCTGTGGCAAAGTATTTCCGCGTTCAGCCAATTTGACGCGTCACTTGCGCACACACACCGGCGAGCAGCCATACACCTGCAAATATTGCGATCGCGCTTTTAGCATTTCATCGAATCTGCAACGCCATGTGCGTAATATACACAACAAGGAGCGGCCATTCCGCTGTCATTTGTGCGACCGTTGCTTCGGACAACAAACGAATCTCGATAGACATTTGAAGAAGCACGAGGCAGACACCAGCGGCATAGGTATTGGTGTTGGCGATTCACCATCGTCAATTGAGGCGGACCGCGATGACTCTTACTTCGATGAAATACGTACGTTTATGGGACAAGTAACCTACAATGAAGAATTGTATACACCCACGAGCATTGGTGGCGCGGAAAATGATACCGAATATGGCGGCAGTGATGTGGATGCAGAGCTATCAGTGTCGCGCTCATCGTCCGTAGATGCAATGGCGGGTGGTAGTGGTGAAGAGCGAGTGACGGTGAAAAAGGAGCCAACGACGGCTATGGCGAAAAGCAACAAAACTATCGAGGTGGGCTCATAA
Protein Sequence: SLYSGGNTTGDDEYNKERSFSEQVDGIDLTDDENGFDIRCEVCDKTFQDLEILDHHLVAKHSFRKDDFACELCSKPFCHRPLLLKHRALVHNDIRKYPCENCTKVFCDPSNLQRHIRANHIGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCEVCFKAYTQFSNLCRHKRMHADCRMQIKCNKCGQSFSTVTSLSKHKRFCDSTSVSTLPPPPVSAASVASGVNLPPHLPSQQQQAMQSRVAALQSMNAAVAAAAGNVNGAGAGLPGAGMPASAHPFLLFPTQPFFPNFPAAAAAYGLQSIFPGSPAQASNFPFLFPKTNLDMRMPGMQTTSNHNAPSSLPSPKAMRQQLNFAFGENMRAGGGSPSSEHSQKQSNNNTERDHVNDAEEDLKTAMPLGLALACNSPNFNNRRSFSPRNHCDEENSSSVELKVSPNEDMDEPEEMPTFESNTCKQTEDDKKSIDIISTPPPAEASDEENSKPTNSAAELPLDLSITRKRARTASCSTSADAQSIHSDLPNQAEQSEHKFVSELRQESNSSRNHSNGATPAKQQRPSLNSSRLSYQSSRTPSVTASPGPTPSPSPPRNEPANLHATDANSSATNGISCPQPMHPHPLLMDEIYRTRALSAAFPRPFPFLGPMGGRPAYEGALHRAGMPFPPEPAFREVLRAAGLTGSMLATASGKIKERYTCKFCGKVFPRSANLTRHLRTHTGEQPYTCKYCDRAFSISSNLQRHVRNIHNKERPFRCHLCDRCFGQQTNLDRHLKKHEADTSGIGIGVGDSPSSIEADRDDSYFDEIRTFMGQVTYNEELYTPTSIGGAENDTEYGGSDVDAELSVSRSSSVDAMAGGSGEERVTVKKEPTTAMAKSNKTIEVGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01189751;
90% Identity: iTF_00083274; iTF_00082333;
80% Identity: -