Afra019019.1
Basic Information
- Insect
- Anastrepha fraterculus
- Gene Symbol
- -
- Assembly
- GCA_037575425.1
- Location
- JAYXIM010024420.1:21106-21564[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.2e-12 1.1e-08 35.9 0.0 3 36 13 46 11 51 0.92
Sequence Information
- Coding Sequence
- ATGCCGAAGAAAAGTGTAATACGAAAATGGAAAGCAGAGGATATGAAAAAGGCTATCCAAGCGGTTAGAAAAGGTGAAATGGGTATTCTCTTGGCTTCCAAGACATTTAGTGTCCCCCATACCACTCTGCAGCGCATGTCAAAATGTGAGAAATCCATCGAGGAGCTGTTGACAACTAAACTTGGCCGGGATCCGATTTTAACAGCGGAAATTGAAAATGACttagttaaatatttactaGAAATGGAGTCAAGGTACTGGGGACTAACACGCGCAGACGTGCGGTCATTGTTTTATCAAATTGCCACAAGAAACAACATTCCCAATAAGTTCTCCTTTTTTAAAGAGTGCGCTGGCAAGGATTGGCTAAAAGGCTTCTGTAACCGACACCGAAATGTTCTGAGTTTTCGAAAGCCAACTGGAACAAGCGTCGACCGTGCACGTGGTTTTTCTCGATAA
- Protein Sequence
- MPKKSVIRKWKAEDMKKAIQAVRKGEMGILLASKTFSVPHTTLQRMSKCEKSIEELLTTKLGRDPILTAEIENDLVKYLLEMESRYWGLTRADVRSLFYQIATRNNIPNKFSFFKECAGKDWLKGFCNRHRNVLSFRKPTGTSVDRARGFSR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00082858; iTF_00082848; iTF_00082854; iTF_00082855; iTF_00082859;
- 90% Identity
- iTF_00082858;
- 80% Identity
- -