Basic Information

Gene Symbol
-
Assembly
GCA_017163975.1
Location
JAFFSR010000333.1:4039600-4060240[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 3.3 1.1e+03 2.9 0.1 1 20 383 403 383 405 0.86
2 16 0.024 8.1 9.7 0.1 2 23 413 435 412 435 0.92
3 16 0.00016 0.054 16.5 2.1 1 20 444 463 444 465 0.95
4 16 0.16 55 7.0 2.0 1 23 472 495 472 495 0.94
5 16 5.1 1.7e+03 2.3 0.7 2 9 569 576 568 578 0.83
6 16 0.00091 0.31 14.1 1.7 2 21 580 599 579 600 0.93
7 16 0.2 69 6.7 0.2 2 23 609 631 608 631 0.94
8 16 0.087 30 7.9 1.0 3 23 673 694 671 694 0.93
9 16 0.082 28 8.0 1.1 2 20 705 723 704 725 0.85
10 16 2.1 7.2e+02 3.5 0.8 1 22 732 753 732 755 0.82
11 16 0.035 12 9.1 1.0 3 23 836 857 835 857 0.97
12 16 3.3e-05 0.011 18.7 1.2 1 21 927 947 927 948 0.96
13 16 0.3 1e+02 6.2 0.3 3 23 958 979 956 979 0.94
14 16 0.053 18 8.6 0.1 1 19 986 1004 986 1007 0.91
15 16 0.085 29 7.9 1.3 1 23 1014 1037 1014 1037 0.95
16 16 1.8e-05 0.006 19.5 0.1 3 22 1045 1064 1044 1064 0.95

Sequence Information

Coding Sequence
atggaaaaaaatagtattgaaaCAAATACTATTCAAACAAATActgttcaaacaaataatattcaAACAAATACTATTCAACTTAATACTattcaaacaagtactattcaAACAAATACTATTCAAACAAATACCATTCAACCAAATACTATTCAAACAAATACTATTCAACCAAATACTATCCAAACAAATACCATTCAACCAAATACTATTCAAACAAATACTATTCAACCAAATACTattcaaacaagtactattcaAACAAATACTTTGGaaacaaataatattgaaaaaaatttagaaccAATCCGCAtcaaagaagaaataatatgtGAAGTAGATATACAACCAAATACTCCTCCAGCATTTGATATTGCAGtttgcAAAGTCTTGTTACACAGACTCCAAATCGATGATCAGATGCAGTCAGGTGGAAAAAAATGTACATCAAACGGTACTGAAATAAGTAACCCTAGAACAAATTCGATTACAGAAGAAATAACAATATCTGATTCGGATTCCGAGAATAGTACATTATCAGCATATACTGTTTCAGCTTACAGTAATTTGAGTGATCCACTGGAGACTGTTGATTATAAGGAACCATTTAATGAAGAATATTCAATAGAGCATATTGAAACCAATACTTCTGAAAAACCGAAAGCTAGAAtttccaGCGTTCTGAACAGAATCTTGGTAGACAAGCTGAAAATCGATGACTATAAGAAATTAGTTGAACCTAACTATACGTTACCAAAAATTGACACAGACAATTTTGAAAGAAGTTGCATCAAAGAAGAACTAATAATATATGATTCAGATACTGAGATCAATATTTCTCCATTTGATGCTGAAATTTCCAGAATCTTCGTAaagaaatcaataattaaaaatcagatGGGATcagttagaaaaaaatgtacattaaacAGCACAGAAACAAATGATCAAGAAATAACTTGGGTTAAAGAAGAAATAACAATATCTGATTCAGATTCCGAGACCAGCGAATCATCAGCACAAGAGAATAAAGTTTCAATACCCAGATTCGTAAAACTACATTGCACTGGctgtaaaataaatgtaataaaagagaaagacgAGCAAATAGATATAGCTTGTTCATTCTGCAATACAAAATTAATGTACCAGTGCATTATTTGCAATACAAAATCGAGCGACAATTATGAGGAATTACAAGCTCACATGTATATGTGTAACAATGGACCAAATATATCGTGCGACAAGTGCCCTTTTGTGACTTTTAATAAGTCCGATTTGGTATCACATCTAATAGCAATGCATCCAGAATCTGTTGATGTGCAGCCCTACCAATGCACAAAATGTCATAAAGCTTTTAAACTTGAAAGTTCTCTGATACGCCATGTTCACAgttgtaatgaaaatttaggATATAAATGTCAAAAATGTAATTATGTTGGAAAAACTATAAAGGCATTATATCAACATAAGTACAGTCAACATTCATTGGTAGGCAATACAAAGTGTGTCAAAtgtgCTCAAGAATTTATTGATGAAAGTTTCGACATTGCAATGATTCAATCAGCGTATATCAAAGAAGAATTTACAATGGGCGATTTTGATGTTCAGAGCAGCATGTCTCGAACATTTGATCCGTCAAAATTGGAAGTTGTAGAATCTTACTGCACTCAGTGTAAACTTAATTTTATCACCGAATCTTGTACCTGTCcaatttgcaacaagaaattGCGCATTCAATGTCGGAAGTGTTATAAAAGCTTTAAAACGAAATTTACGCTAAAGGAGCATTTATTGTACAGATGtaataaaaaaccaaatattTCCTGTGACTCATGCTCTTATAAAGCTCCTCGTAAGACTGATTTAGTTCTCCATATCAGAGCAAAACACTCGGATATTATTACTTCTTCAAAgcataaaaaatctttcaaacatGGTGAAAATTACAAACCTCAAGCAGGTATGATGTACCGGGaaatcaaacataaaaatgGCAAGATACCTAATATCTGCTGTGACAAGTGCGCTTATAAAACTGTTCGTAAGATCGATTTAATTAGACATATTGTGTCAAAACATTCAGACTCAATTACTTCTTCGGAAAGCCAGAAATGTTCCAAATGCaataaaactttcaattttcGATACAAAGCTTTACTTCATGAACGCGATTGTGGTGAACAAAAAGTATACAAGTGTCAAAAATGTGATTATATTGGTGGTACTATGGCTGGACTATATCAACATAAATACTATAGTCATTCAATGCTTGGCAAAAGAGTTTATGATGAAATCATAATGGAAGAAAGTTTTATGATTGAGAGTTCTGaaacaaacaattttcaaaCAACATACATCAAAGAAGAAATAAATCTGTGTGACCCAGGAAATGAAATGGTTGATCCTTCAAaTTTAAGCCACGCAGTAAATTATTGTTCTCATTGTAAAACTGATTACTTCAACAAGGATCCTAATTGTTCCATGTGCAAAGACAAAATCCTTTGTAACATGTGCACTTATGCAGCTACCAGTAAAACtgatttcataaaacatttaaaatctaAACATCCTCAAGCTATGAAAGCAATGAAGCATTTAACTCCTAAATCAGTGGGTGACATTTTAGTTCCAAACATATCCTTCAAATCAGGTGACCAAATGCTAACTAATAGAAGTATTTTCATTGAACAATCCGAAAAAACCGATTTTGAAACAGCATGGATCAATGAAGATCTAACTCCCAGTAATTCAGaaaCCAATCCTTTGGGATTAGGATTCGAATGTGAGATATgtaaaaaattctacaaaagcAAAGATTCTCTAAGAATGCACATGAATTACAGATGTAATAAAAAGCGAAACATTTTCTGTGTATTATGCCCTTTCAAAACTAATCTTAAACAAGACTTGGTTCGTCATATTAGAGCAAAACACTCAGAAAATCCAAATCCTTACAAATGTTCTCAATGTAATGAGATTTTCAACTCTCGATGGAAAGCGGTTCGACATGAAGAAGTCTGTGGCATGAACTTAATTTTTGCATGTGATCAATGCAATCACGTTAGCAAAAGTTTAAATGCACTTCAAATGCATAAGTACACTGAGCATAGATTTACTGAAGAAAAGATCTGTCCTAAATGCggcaaaacttttaaaaatgtgaTCGAATTACAAAATCATATGCTAACATCGCAAACTTGTATAGAAACTCAAACTTAA
Protein Sequence
MEKNSIETNTIQTNTVQTNNIQTNTIQLNTIQTSTIQTNTIQTNTIQPNTIQTNTIQPNTIQTNTIQPNTIQTNTIQPNTIQTSTIQTNTLETNNIEKNLEPIRIKEEIICEVDIQPNTPPAFDIAVCKVLLHRLQIDDQMQSGGKKCTSNGTEISNPRTNSITEEITISDSDSENSTLSAYTVSAYSNLSDPLETVDYKEPFNEEYSIEHIETNTSEKPKARISSVLNRILVDKLKIDDYKKLVEPNYTLPKIDTDNFERSCIKEELIIYDSDTEINISPFDAEISRIFVKKSIIKNQMGSVRKKCTLNSTETNDQEITWVKEEITISDSDSETSESSAQENKVSIPRFVKLHCTGCKINVIKEKDEQIDIACSFCNTKLMYQCIICNTKSSDNYEELQAHMYMCNNGPNISCDKCPFVTFNKSDLVSHLIAMHPESVDVQPYQCTKCHKAFKLESSLIRHVHSCNENLGYKCQKCNYVGKTIKALYQHKYSQHSLVGNTKCVKCAQEFIDESFDIAMIQSAYIKEEFTMGDFDVQSSMSRTFDPSKLEVVESYCTQCKLNFITESCTCPICNKKLRIQCRKCYKSFKTKFTLKEHLLYRCNKKPNISCDSCSYKAPRKTDLVLHIRAKHSDIITSSKHKKSFKHGENYKPQAGMMYREIKHKNGKIPNICCDKCAYKTVRKIDLIRHIVSKHSDSITSSESQKCSKCNKTFNFRYKALLHERDCGEQKVYKCQKCDYIGGTMAGLYQHKYYSHSMLGKRVYDEIIMEESFMIESSETNNFQTTYIKEEINLCDPGNEMVDPSNLSHAVNYCSHCKTDYFNKDPNCSMCKDKILCNMCTYAATSKTDFIKHLKSKHPQAMKAMKHLTPKSVGDILVPNISFKSGDQMLTNRSIFIEQSEKTDFETAWINEDLTPSNSETNPLGLGFECEICKKFYKSKDSLRMHMNYRCNKKRNIFCVLCPFKTNLKQDLVRHIRAKHSENPNPYKCSQCNEIFNSRWKAVRHEEVCGMNLIFACDQCNHVSKSLNALQMHKYTEHRFTEEKICPKCGKTFKNVIELQNHMLTSQTCIETQT*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-