Basic Information

Gene Symbol
zfh1
Assembly
GCA_017163975.1
Location
JAFFSR010000222.1:1910099-1915083[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 7 0.36 1.2e+02 6.0 0.7 2 23 70 92 70 92 0.87
2 7 4e-05 0.014 18.4 0.6 2 23 115 136 114 136 0.97
3 7 6.1e-06 0.0021 21.0 5.6 1 23 145 167 145 167 0.99
4 7 2.4e-05 0.0081 19.1 1.9 1 21 173 193 173 194 0.95
5 7 0.00014 0.048 16.7 4.7 1 23 743 765 743 765 0.94
6 7 3.3e-05 0.011 18.6 8.1 1 23 771 793 771 793 0.98
7 7 0.0025 0.86 12.7 4.3 1 21 799 819 799 820 0.96

Sequence Information

Coding Sequence
ATGAGCAGTAAAAACAGGTACAGCGAGGATGAAGCAGGTGCTGACGCAGAGGTAGGCGGTTGCGCTGACGGCGTTAGTAATGGTGGTAAAGTCAGTAACGGTGATGTGAGCACCGATTCTGGTATATTATCATCGACGGCGAATAACGACAATAGCGTTACAACGAATAACGTTGGCAATAACGTTAAACAATCGATGACAAGCGCGCGTTGTCCACAGTGCGGTATTGTCTGTCGTAATACACGCATATTACAGCTACATCTCGAAGATCAACACAAGTCCTCGTCGCAGAATGCCTACAACATCGATAAAAACGATCTACAAACGCAATTCTCACAAGTTTCGTGCAAAGTATGCAGCAAAACTTTTGCAAACGTGTACAGACTACAAAGGCACATGATTAGCCATGACGAAAGCGCGGTACTTCGTAAATTCAAGTGTCCTAACTGCGAAAAGGCCTTTAAATTCAAACACCATCTTAagGAGCACTTAAGAATACACAGCGGGGAGAAGCCCTTCCAATGCAATAACTGCGGCAAAAGATTCTCTCACTCGGGCTCTTATTCCTCGCACATGACATCGAAGAAGTGCCTTGTAGTCAATCTTAAGAAATCGAGACAGAGTTCTATTAACTCAGCCGCTAATGCCAATGAACGAGCAtcgattaacaataaaaaatctaCCCAagaacagcagcagcaacaaccgCAACAACCacaacagcaacagcaacaattgcaacaacagcagcaacaaaATCAACAGCAACAGCCGTCGATACAAGTTAAACGTGATGTGGATTTGTTGAATGTTAATAATACtgcttttaataataatacttttcCACCGATACTTCCTAAGCTCTCGCCTTCAGATTTCCGGGATATACAGCGCGATGCAGCagcTGCCGGTTTCTACGATATGCCTACGTTACTACCTCACATGATGAGTTTTGGCAGTTACTTTCTGCAATCCCCCATTGACAAAATTTTAGCCCAGTTACATGCAAAGCACCAAGAACATCAGCATCAATTACACAACAACCACAATAATCGTCACTACAATAACCATCGATCAGACGAAATAGGCAGCGAGCATTACGATGCTCTAAGCCAACAAAGCGAAGCCGCTTTGAGTCCTTCGACAACAGCACCTGATTCCGAAGGCACGACAACCGAAGGTACCGAGGGTGGCGAAGAATCACCCGCACCTCCACCGCCAGGTCTTTTGCATTTATATCGTCCTGAACAATCTCAAGATTTCGATGCCGTAAGGCGTCTTCTGGAAACTGTCAATACGTCCGTTACTAAACAGTTGCTTGAAGCTAATGTTAGAAAACTTGCATCCTCGCCTGCTATGGTCATCAAACGTGATATCGATGAAGACTATCCGGATCAAGATAGTGAAATGTCGAGCGAAATGGCACACTATCCAGCCGACTGGTCGGCTACGGATCAATGCGACTCGCAAAGCGAAAGTCTCACTGCGAAACTTGAGAACATTCGAGTCAAAGGAACAATATCGCCTCGTCAATATCTAAAACGTAAACTTGAAAACGGCATTTCAACTCACACCTCTGAAGCTGACAGCGAGGACGATGACGAATCTTTGCGTCAACACCAATCGGACGGACAGATTGGAAGCGCTGGTGCTGCTCGAAGAGTTAGGGCTAGATCACTTATTGACGATGAACAATTGGCCGTGCTTAAGGGATATTATGCTATAAATTCTCGTCCTAAAAAGGAAGAAATTACCATGATCGCTAATTACATTAACTTTCCTACGCGTGTTGTTCAGGTTTGGTTTCAAAATTCTCGTGCGAGAGATCGGCGCGAAGCTAAAATACCGGCACTAGTGCCGCTCTCAAGCCTAAACAATCACATATATAACGATCAGCCACTTGATCTTTCAATGAAGGACGTCAAGACAGTACCTACAATAAAAAGCAGTAGTGATACCTTTAACAGAAACACCATCTCACCTTGTGGTCCAAAGGAAGATGCTCTTGTACCTAAAATGGTTGTCAATAATAATGTAGAAACCGAAGATACAGAAGAGTCACCTCTCGTGATTGATGAAACGACAACTGACTCCGCTGAAGTCAAACCAACCGCAATGCCTGTCGAAGTTATCATTAaggctGAATCTCCAGTTGTGCAAATTAAAAATGAGAGGAGGGTAAATGCAGATCCTCCACCGCAAACTGAAACGGAACAAGAAGGCCTATATTTCTGTAACCAGTGTGATAAGACTTTCTCCAAACATAGCTCTCTTGCAAGACATAAATATGAACATTCCGGGCAAAGGCCGTATAAGTGTCAGGAGTGCCCGAAAGCGTTTAAACATAAGCATCACCTGACGGAACATAAGCGACTGCACAGTGGCGAAAAGCCCTTCCAGTGCTCAAAGTGCCTAAAGCGCTTTTCCCATTCCGGTTCTTACAGCCAGCATATGAACCATCGTTACTCATTTTGCAAGCCTTACAGAGAATAG
Protein Sequence
MSSKNRYSEDEAGADAEVGGCADGVSNGGKVSNGDVSTDSGILSSTANNDNSVTTNNVGNNVKQSMTSARCPQCGIVCRNTRILQLHLEDQHKSSSQNAYNIDKNDLQTQFSQVSCKVCSKTFANVYRLQRHMISHDESAVLRKFKCPNCEKAFKFKHHLKEHLRIHSGEKPFQCNNCGKRFSHSGSYSSHMTSKKCLVVNLKKSRQSSINSAANANERASINNKKSTQEQQQQQPQQPQQQQQQLQQQQQQNQQQQPSIQVKRDVDLLNVNNTAFNNNTFPPILPKLSPSDFRDIQRDAAAAGFYDMPTLLPHMMSFGSYFLQSPIDKILAQLHAKHQEHQHQLHNNHNNRHYNNHRSDEIGSEHYDALSQQSEAALSPSTTAPDSEGTTTEGTEGGEESPAPPPPGLLHLYRPEQSQDFDAVRRLLETVNTSVTKQLLEANVRKLASSPAMVIKRDIDEDYPDQDSEMSSEMAHYPADWSATDQCDSQSESLTAKLENIRVKGTISPRQYLKRKLENGISTHTSEADSEDDDESLRQHQSDGQIGSAGAARRVRARSLIDDEQLAVLKGYYAINSRPKKEEITMIANYINFPTRVVQVWFQNSRARDRREAKIPALVPLSSLNNHIYNDQPLDLSMKDVKTVPTIKSSSDTFNRNTISPCGPKEDALVPKMVVNNNVETEDTEESPLVIDETTTDSAEVKPTAMPVEVIIKAESPVVQIKNERRVNADPPPQTETEQEGLYFCNQCDKTFSKHSSLARHKYEHSGQRPYKCQECPKAFKHKHHLTEHKRLHSGEKPFQCSKCLKRFSHSGSYSQHMNHRYSFCKPYRE*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00079728;
90% Identity
iTF_00079728;
80% Identity
iTF_00079728;