Basic Information

Gene Symbol
-
Assembly
GCA_017163975.1
Location
JAFFSR010000251.1:3482513-3485296[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 7 4.8e-05 0.016 18.1 1.9 2 23 445 467 444 467 0.95
2 7 1.4e-06 0.00047 23.0 0.5 1 23 478 500 478 500 0.98
3 7 4.8e-06 0.0016 21.3 0.6 1 23 506 528 506 528 0.98
4 7 0.046 15 8.8 0.2 3 23 537 557 535 557 0.92
5 7 8e-05 0.027 17.5 6.6 1 23 565 587 565 587 0.97
6 7 2.5e-07 8.6e-05 25.3 0.3 1 23 593 615 593 615 0.97
7 7 6e-06 0.0021 21.0 0.6 2 23 626 648 625 648 0.95

Sequence Information

Coding Sequence
ATGGAGGTTGATACAAATGTAACACAAATCTTAGAGGAAGCAGTTGAAGGACAAGAAATTATTTTGGAAACTGAAGGTGATTGTGAAGATggagaaattgaagaaattgtAGAAATTATTGAAGAAATTGAAGAGATCGAAGATGATGAAGAAGTTGAACAAGTTGAACAAGTTGAAGAAGTTGAGCAAGTAGAAGAAGAGGAATTAATTCAAGAAGAAGAGGTTTTACAAAGAGTTAATGATGCACATGTACAAGAAGAAATTCATCAAGTTAATAACAGAAAAgtatatcaaatttattttttggcaCAACTACTACATGAAACATTTATTTATGAAGTATATTATTTACAGCAAATTGTATACTCTACCTCTCGTCAACCTACGCGCAATCGGAACAGATCTAATTATCAGGTTCAATACGATGCATCTGCTGATTGGGAAGATGAGGAATATGAACATGAAGAACAAATTCGTAGAgttgaaaatattgaagaacAAACAACAAATGATGAAGAATATAATACCTATGTAGAATATAATAATGGAGAGAGTAGTGAAGTAATTAATGATGAAGGAAGATCAGAACATTCTAGGTCTGaagtaaattatgaaaataatttcaatcaaGAAAATAACAGTGCAGATGGGGACGATAGTCAACATGAAATTGTTCAAAACTCAGAAAATAATCTTGTGTATACTGTACTAGGTTCTAAAAAACAAGTAAGGACAGAACAAGAAGGAAGATCAGATGTAGAATTTGTTGAGGTACAAAGGTATAGAGATGATAATTTACCTGATGATGGAACAATATATTATGCCATTAATGATGGGGATGGAACTTATGTTCAGGCagttgaagaaaatcaacaacaATATCAGTATGATAATGAACAAGTACCAATGGAACAAGAAAATCAGGAGTGGGACACATCTAATCAAAACACAGAAGTTCAACAAGAAGAGgCAGAAcaagatcaaatttttttgcatgaagaTGAACATGgacaattgtattttaaaaatgaacatGGCCAACTTCAACCGGTTTACCTCACACCTGATGGAAATTATGCTATAGCAGAAAATAGCAGTGACGAACAAGATAGTCAGGAAGGTGTAAATCAAATTCAAGAGCAAGAAGAACCTGCAGAAACAGAAAATTATGTTCTTCCAGATTTGGATGTCAAACCATTTATGCCTAAAAAGCAAACAGTTGCACAACAAGAAGACAATGATGATAGTACTGTAAcaatatcattaataatatcaGAGGATGAAAATGGACAAAAACGAACTCAAGTTATTATACCGACTCCAAACGACTCAAAATgtaatatatgtaataaaacttttaaatcacCTTTACAATTACTCAAGCATAATAGATTAAAGCATGCCAGAGAAGAAGATATCACCACTAGAAATTTCCCATGTGATTTGTGTCCGAAAAGATTTACTGATCAAAATTCATTGGCTCGTCATAGAAAAATTCATACTGAAAATCGACCATTTCAGTGTTTGGAATGTCATAAATCATTTGCTACTGCTAATGCTTTACGAAATCATTTGGCAGTACATAATCCAGATTCAAATCCTTTGCCGTGTATTTATTGTGGCCGTAGATTTTTAGACAAACCTAGTCTAATGAAACATGAACAATCACATTTAGCTGGTGAAAAAAGGACACACGTTTGTGACCATTGTCAAAAATGTTTCTCAAACGCTACAGACTTGAATATTCATAGAAAGAATCATGACCCTGATAGGAAATTCGATTGCGAAGTATGCGGACGTGAATTTaatcgattaaataatttgcAACGTCATATGATGGTACATCAACagCAAGGAGCAAGCGAAGAAGTGTTGTCTTGTAATGTATGCGGAATAACGTATAAGTTTTCGAGTTCATTGACTAGACATATGGTCACAACGCACATGAATCCTGAGAAACTTCGACAACAAGCTgaagaacaaagaaaaaaacgtGAAAATAATTATCGTCGATATCTTGAGAATCGAAAAACGTACGAAACGCAACAACCAAAACGTCCTTATCGTCGTTCCGGTGGCAGACTAATGgatgatgaagatgatgaaGCTGATTGA
Protein Sequence
MEVDTNVTQILEEAVEGQEIILETEGDCEDGEIEEIVEIIEEIEEIEDDEEVEQVEQVEEVEQVEEEELIQEEEVLQRVNDAHVQEEIHQVNNRKVYQIYFLAQLLHETFIYEVYYLQQIVYSTSRQPTRNRNRSNYQVQYDASADWEDEEYEHEEQIRRVENIEEQTTNDEEYNTYVEYNNGESSEVINDEGRSEHSRSEVNYENNFNQENNSADGDDSQHEIVQNSENNLVYTVLGSKKQVRTEQEGRSDVEFVEVQRYRDDNLPDDGTIYYAINDGDGTYVQAVEENQQQYQYDNEQVPMEQENQEWDTSNQNTEVQQEEAEQDQIFLHEDEHGQLYFKNEHGQLQPVYLTPDGNYAIAENSSDEQDSQEGVNQIQEQEEPAETENYVLPDLDVKPFMPKKQTVAQQEDNDDSTVTISLIISEDENGQKRTQVIIPTPNDSKCNICNKTFKSPLQLLKHNRLKHAREEDITTRNFPCDLCPKRFTDQNSLARHRKIHTENRPFQCLECHKSFATANALRNHLAVHNPDSNPLPCIYCGRRFLDKPSLMKHEQSHLAGEKRTHVCDHCQKCFSNATDLNIHRKNHDPDRKFDCEVCGREFNRLNNLQRHMMVHQQQGASEEVLSCNVCGITYKFSSSLTRHMVTTHMNPEKLRQQAEEQRKKRENNYRRYLENRKTYETQQPKRPYRRSGGRLMDDEDDEAD*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-