Basic Information

Gene Symbol
ttk
Assembly
GCA_017163975.1
Location
JAFFSR010000227.1:14849183-14884920[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 1.3e-07 4.3e-05 26.3 2.3 1 23 472 494 472 494 0.98
2 8 1.9e-05 0.0065 19.4 3.0 1 23 500 522 500 522 0.98
3 8 2.8e-06 0.00095 22.0 0.3 2 23 531 552 531 552 0.97
4 8 1.3e-05 0.0045 19.9 0.1 1 23 558 580 558 580 0.98
5 8 2.2e-07 7.6e-05 25.5 3.0 1 23 586 608 586 608 0.98
6 8 4.8e-06 0.0016 21.3 2.1 1 23 614 636 614 636 0.98
7 8 8.1e-05 0.028 17.4 7.5 1 23 642 664 642 664 0.98
8 8 4.1e-05 0.014 18.4 1.5 1 21 670 690 670 691 0.95

Sequence Information

Coding Sequence
ATGCGAGAAATGCCAACGAGCAGTAGTATGGAAGTGATAAAACTATCGGGTCGTGCGCCCGAAGTAAGTGACTTTTTACGAGAAGCCATGCTGTCGCAAAGATTCGCCGATGTCGCACTCTGCTGTCCTGGTGGACAAAAGTTCCTCGCTCATAGGCTTGTACTATCAGCCGCTAGTCCTTATCTACAGGAAGTGTTATTGGCGCACAGTAAATCGACGAGCTATTGCGAGCCGATAACAGTAATCCTCGCTGAAATTGAAGGTCCGGAATTGGCGGCGTTGCTTGGTTTCGTGTATACGGGAAGTGCAACGGTGCCAAGGTCAAGGCTAGATGCATTTTTACGCGCTGCCGAAGCGTTACATATTAGATTACCATCGATTCCTAATCATCATATTAgtagtaataataacaataataataatagcacGTCATATGAGCGGGATCTCAAAGACGAGTTAAAAGTACCATTGCCACCGCAACAATCGTATTTACATGCGCAACAGTATCCGTCAAGTTGGAATTTCGTTGATAACAAACACGATTGGCCAAGATCAAGTCCGGAACCATTGAGAATATGGAATAACGAGCCATTGCCGATGGTTTACAGAGCGCCTATCGAAGAGCCGATTATCGCAACGTGGACGACAAATGATAAAAGCGAAGATCTTAGTTGTAGGGAAAAATGTTGTACGTGGAGATTAGCCAGGAGACAGGTGTCGAATCAAGTGACTGCATCGCCATGGAGACAAATCGTTAGGCCACATCATTCACCGAAAATTCAACCGATCATGCAGAGTCATCCGTCATCGAGCGAACCGATGGTAGAGATGGGATCACAAGTAGACACGTATCGTGGACCAGTGTCGCCGTGTACATTAACACGTTGCTGTCTATCGCCGAAATCATGCGAAGCCCAACCATTGATCAACAAAGATACGTTTTATCAAGTTCCTACGAGCGATCAGCCCGCGGTGCTCACCGATTATTACGGCAGATCGGCAAGTGTACCCACGGCTTTTTATCCAACGGCGTTACCAACACCACCTACAAACTTAACTACGTCGCCTATACACGTACCAATTAAACCTGTTGTTCAGGTTGTTCAACAACCACCACCTCCACCAGTACTACCAGCATCACAGCAACCAttacaacaacagcaacaacaaagGAGTGGATCCAAGCCTGAAATATCACATCCTGTTAGTAGACTGTGTGATTCTTTAGAAAATGATACGCAAAAGAAGCAAACCGATAGCAAAGATACCGAAAATGATCCTAAAGTATTGGCGGCTGGCCGTCAACGTAATTATCCGCTCGTCAGCGATGATAACAATAACGAAGCTACGTCGATCAACGAAAGAGAAGCTACAACGACACTGCCAACTAATAATAACGTTAATGAAAACGATCACAAGTGCGATCAGTGTGGAAAGACTTTCGTTACCAGGGCTTCGCTCAAGGTTCACCTTCGCACACACTCGGGCGAGAAGCCGTTTCGTTGCACCGACTGTGGCAAGCAATTTTCCCAGCTACGCAACTACAAGTATCATAGATCGGTGCACGAGGGTACCCGTGAATTCGCAGCCAGCTGTCCCGAGTGCGGCAAATATTTCAACGACCGTGGCTACTTAAGTTCACACATGAAAATCCATCGTAATCGCAAGGAGTACGCTTGCGCCGAGTGCGGCAAGAGTTTCAATCAGCGCGTAGCTTACAATATGCACGTTAGAATCCACACGGGATTGAAACCGCATCAGTGCGAACAATGCGGCAAAGCATTTTCCCGTAAAATGTTACTGAAGCAACATCTACGCACGCATTCCGGCGAACGACCGTATCAATGTCAAGTTTGTCACAAAGCGTTCGCCGATCGTTCCAACATGACGTTGCATACGCGTTTGCACTCTGGTTTGAAACCATACCAGTGTACACTGTGCTCAAAGGCGTTCACtaaaaaacatcatttaaaaACGCATTTGAATTATCACACCGGCACAAAACCCTACTCCTGTCCTAATTGTAATTTAAGGTTTTCGCAAAGCAGCAACATGAGGACGCATTACAAAAAGTGTGCGGTTAATAATCCCAATGGTTTGGCTGCACCAAATAACAACAATAACGTCGTCAGCACTGCCAATGCGGTCAATAACAATCAGCAGATCGTCGTCGGCAATTCAACATCCTCGGCATTAACGCCACCGAATTCGGATCAAGAATCAACCATACTCACGCCTATCGTTAGGCCCAACGTTACATCCACTGCCACTATTAAGACTTGA
Protein Sequence
MREMPTSSSMEVIKLSGRAPEVSDFLREAMLSQRFADVALCCPGGQKFLAHRLVLSAASPYLQEVLLAHSKSTSYCEPITVILAEIEGPELAALLGFVYTGSATVPRSRLDAFLRAAEALHIRLPSIPNHHISSNNNNNNNSTSYERDLKDELKVPLPPQQSYLHAQQYPSSWNFVDNKHDWPRSSPEPLRIWNNEPLPMVYRAPIEEPIIATWTTNDKSEDLSCREKCCTWRLARRQVSNQVTASPWRQIVRPHHSPKIQPIMQSHPSSSEPMVEMGSQVDTYRGPVSPCTLTRCCLSPKSCEAQPLINKDTFYQVPTSDQPAVLTDYYGRSASVPTAFYPTALPTPPTNLTTSPIHVPIKPVVQVVQQPPPPPVLPASQQPLQQQQQQRSGSKPEISHPVSRLCDSLENDTQKKQTDSKDTENDPKVLAAGRQRNYPLVSDDNNNEATSINEREATTTLPTNNNVNENDHKCDQCGKTFVTRASLKVHLRTHSGEKPFRCTDCGKQFSQLRNYKYHRSVHEGTREFAASCPECGKYFNDRGYLSSHMKIHRNRKEYACAECGKSFNQRVAYNMHVRIHTGLKPHQCEQCGKAFSRKMLLKQHLRTHSGERPYQCQVCHKAFADRSNMTLHTRLHSGLKPYQCTLCSKAFTKKHHLKTHLNYHTGTKPYSCPNCNLRFSQSSNMRTHYKKCAVNNPNGLAAPNNNNNVVSTANAVNNNQQIVVGNSTSSALTPPNSDQESTILTPIVRPNVTSTATIKT*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00080456;
90% Identity
iTF_00080456;
80% Identity
iTF_00080456;