Basic Information

Gene Symbol
-
Assembly
GCA_017163975.1
Location
JAFFSR010000227.1:10926831-10930852[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 4.4e-06 0.0015 21.4 1.4 1 23 147 169 147 169 0.98
2 15 9.5e-05 0.032 17.2 0.2 3 23 177 197 176 197 0.99
3 15 0.00011 0.038 17.0 0.1 1 23 285 307 285 307 0.98
4 15 0.0039 1.3 12.1 0.2 1 23 313 336 313 336 0.97
5 15 0.0031 1.1 12.4 3.6 1 23 364 386 364 386 0.97
6 15 2.6 8.7e+02 3.3 0.0 1 23 402 424 402 424 0.86
7 15 0.065 22 8.3 0.3 2 23 432 454 432 454 0.95
8 15 0.066 22 8.3 1.4 5 19 465 479 462 483 0.90
9 15 0.00029 0.097 15.7 3.5 3 23 491 511 489 511 0.97
10 15 0.021 7 9.9 0.1 3 23 518 538 517 538 0.97
11 15 1.2e-05 0.0041 20.0 0.4 1 23 547 569 547 569 0.98
12 15 0.0052 1.8 11.7 0.2 3 23 577 597 575 597 0.97
13 15 0.0046 1.6 11.9 0.2 3 23 605 625 603 626 0.94
14 15 0.057 19 8.5 0.0 1 23 640 662 640 662 0.95
15 15 0.0037 1.2 12.2 0.3 1 20 1094 1113 1094 1116 0.93

Sequence Information

Coding Sequence
ATGGATGTCAGCGGTGATTTAACTCTACAATGGGTAGAGGAAGTGGGGAACGTGATTCACGAAGAAGTAATATGTGGCCTCGAAGCAGAATTAGATGCTCCTGTGGAGGAGGTGGTTGGAGCATGCGAAGAGGTTACTGTAGAAGAGACTGTAGAGTCTGTTCCAGAGGACTCTACTCCTATAACAGATACAGAAATTCTAATGGTTCCACAGTCAAGCGATATGGAATCAATATATGTTATTCCACAAGATCAGGGCCATGATTATCTCAATATACAGGTCACTGAAGAGGTGATCACTGATAACTGGGATAGGTCAGGCCCAGATGATGGaatggAAGTACCAGAAACTAAAGTTTCACATGACAATTTATTAGAATATGATGATATGGAAATACCTTTACCAATCGATCAAGATTCTTATACAAATACCAGACCTTACCCATGTGATTTTTGTAGTAAAAGATTTAGGAAAAAAGCAAATCTTATGAACCATATGGTAACACATCAGACAGAGCGTCCTCATGGTTGTAATTTGTGTGGTGCTCGTTATGTAAGAAAGTCTGATTTAATGAACCATTTAAAAATCCATGCTTATGCCCCAACTCGAGATGGTTTAGAAGATGATTTAGAAGACCCACTAGCAactgaagaagaagaaaaccaTCCTGTTAAAGGTCGCCGTAAAAAAGTGCAAACAAACGTTCCTAGAAAAAGAAAAGCACCTCTACCTGGAGCTCAAAAACGTAACATTAATGATGGGGCAAGGTTAGATCTAAGCAAATGGACAGATCAACTGTCAGCTAGTGAACAACAAGTGCCTCGGTGGCCAGTTACTGATTCTTCAAAACCATATGTGTGCCAGTTTTGTGGAGTAAGTTTTGCAAGAGAAAAAGCTCTTGCATCACATGCTCGTATTCATGGTGGTGATAGTCCATTTGAATGCACATCTTGTGGTGAAATGTTTTGGGATGTTAATACACTTCAAGAACATATGCGTGTTAAACATGGCATTGGTTTGATTGCTCAATCAGATCaggaagaaatagaaaatgaaataacGTATACAGGTGATGAAAGGATAGGTGAATTTTGCTGTGAAACATGTGGAGTTCCTTACCACAGATTAGATCTTCTAAAACGACATAGGAAAATTCACATAAAACAAGAAGTAGATACAATGGAAGGTGGTTCCAGTCAACATCACGTTTGCAATGTTTGTGGTGAATGGTTCGAAGAAGCTTTAGCTTTACTTGCACATGCTGAATTGCACGCTAGTAGGTCACCTAGTCGTAGATGTCTATTGTGTGGAGAAAGGTGTCGAGACGACGCTGAACTCGCGGAGCATGTTCGTGAAATGCACGCAGAAGATGCACCTCCAAATACATGCATTTTATGCGGAAAGACATGTAAAGACAAACGTAGTTTGATAAAACATTCGTGGATACATAATACCGATAAAACATTTGGTTGTACAAAGTGTGGAAAACGCTTTCACAGTAAAGCAAGATTACGAagacacATGGTATCACATCGCAATAAAATGGTCGCTTGCGATGAGTGTGGCGAGGAATTCCCTGATGGTCGAGCTTTGGTTAGCCATCGTCATTCGCACAATAAGGATTTAGGTGGGAGAACTTTTCCGTGTCGAGAGTGCGGCAAAACATTTGGTAGTCGTAGCTCTCAACAGATTCACATACGTATACATACCGGCGAACGGCCTTATGGCTGCCGATTTTGTTGGAAAGCTTTCGCCGATGGTGGTACTCTTAGAAAGCATGAAAGAATACACACTGGAGAAAAACCTTACGGCTGTGCCATATGCCCTCGTGCTTTTAATCAGCGAgttGTATTACGTGAGCATGTACGAGCTCATCACTCAGGTCCAGATCCAAAATGTCACAACAGCCTCACACCTTATATGTGCAAGGTTTGTGGTGATACCCTACAAACTTCAGATGAACTTGTGGCTCACATAGTTGCTCACTGCGATGAAAATACGGCAATGCGACGACAACCACAAGCAGGTCCTAGAAAATACAAGCGGCGACGTAAATTAAAACATGATGGTACAACGCTTACATCGCGCCTAAATGATTCTTTTGATATGCTTGATGGTCCTTCTGATTCAGATGAAAATACCAAACGTAAACTTGGCAAAAAAACTAAACAACAACATCGCTCTAATGTTGAGGAAGGCTATCACAATGTTCTCAAAAGTTTTGAGAGTTCGATACATAATATTAACTCTATTGTCAGCAATTCCAAGACATTTCCGTCAAAAACGAAAGGTgctaagaaaaaattaaaaaaggaagaaaaaaaaggtgcaAGTACAAGTGCAACTAATGATGTACCTTCTTCAAATCATCCAGGCAGACCAAAGATGATTCATACACAAAAGACTCGAGTTCCTGTTGAAATGGGCACTGATGGTGTGAAGAAGGGTCAGAAAACTAAAACAATGGTAACAAGGACACCAAAAGTCATGCCTAAcgaacaacagcaacaacagcagcagcaaatACTTCCGGGCGTTATCCCAAGTGGTGAGAGAAGTAGACCACGAACCAAAAATGTAAGTTATCATGTGGAAGGTAGACAACAATTTATTCCTGCTATATTCCCAAAACCAAAGGATGATGAAATGGCTGTACCACCAATAACAGATGCACCGCCTATTGAAATGGTCAATATCAAAGTTGAACCCGGTTTACAAAAGTTGATACCCACTCAAAATCATGCAACTAATAATAATGGAGAAATGATCcaattaaaacaagaaaaactTGACAAAGAGAAACCTACGACGAAACGGCGAGGACCTGCTAAAAAGACGAAGAGAAGGCAGGCTGCTGCTACAAGAAAATCTAAAGATAAATCTGTACCAATTATTCCTGAAATTCCTAACAACAACAACCTTATGGAAGAAGAAAGATCCGTTGAACACTtgcaacagcagcaacaacaacaacaactacAACTACCAGAAACTCAACCAACACAATTGTTTGAATCGGTTGTTGATGGCAATAACCTTGAAGTAGCTTTTGAAGCAAATGTTGTCTCTGAACAAGAAGATATAGTGCATGAGTCGATACTTCCTGATTTGGATAAGGTTAATCACGTAGAAGAGATTGGTTCTAGTGGCGACGATAATACCGGTAATGTCAAGCTTAGTGTTAAAGTTGAATCAACGCCTAATAACATGCTCATGCATAATCTAATTGGTTCAGTTGAGGAATCGGTGCCTGAAACTATTATACCCGATACTGTAGAATATACTTGCGAAATGTGCCAACAGGTGTTTGAATCGCGGCATGAACTTCTACTTCATGTGCCCATACATATTTGA
Protein Sequence
MDVSGDLTLQWVEEVGNVIHEEVICGLEAELDAPVEEVVGACEEVTVEETVESVPEDSTPITDTEILMVPQSSDMESIYVIPQDQGHDYLNIQVTEEVITDNWDRSGPDDGMEVPETKVSHDNLLEYDDMEIPLPIDQDSYTNTRPYPCDFCSKRFRKKANLMNHMVTHQTERPHGCNLCGARYVRKSDLMNHLKIHAYAPTRDGLEDDLEDPLATEEEENHPVKGRRKKVQTNVPRKRKAPLPGAQKRNINDGARLDLSKWTDQLSASEQQVPRWPVTDSSKPYVCQFCGVSFAREKALASHARIHGGDSPFECTSCGEMFWDVNTLQEHMRVKHGIGLIAQSDQEEIENEITYTGDERIGEFCCETCGVPYHRLDLLKRHRKIHIKQEVDTMEGGSSQHHVCNVCGEWFEEALALLAHAELHASRSPSRRCLLCGERCRDDAELAEHVREMHAEDAPPNTCILCGKTCKDKRSLIKHSWIHNTDKTFGCTKCGKRFHSKARLRRHMVSHRNKMVACDECGEEFPDGRALVSHRHSHNKDLGGRTFPCRECGKTFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYGCAICPRAFNQRVVLREHVRAHHSGPDPKCHNSLTPYMCKVCGDTLQTSDELVAHIVAHCDENTAMRRQPQAGPRKYKRRRKLKHDGTTLTSRLNDSFDMLDGPSDSDENTKRKLGKKTKQQHRSNVEEGYHNVLKSFESSIHNINSIVSNSKTFPSKTKGAKKKLKKEEKKGASTSATNDVPSSNHPGRPKMIHTQKTRVPVEMGTDGVKKGQKTKTMVTRTPKVMPNEQQQQQQQQILPGVIPSGERSRPRTKNVSYHVEGRQQFIPAIFPKPKDDEMAVPPITDAPPIEMVNIKVEPGLQKLIPTQNHATNNNGEMIQLKQEKLDKEKPTTKRRGPAKKTKRRQAAATRKSKDKSVPIIPEIPNNNNLMEEERSVEHLQQQQQQQQLQLPETQPTQLFESVVDGNNLEVAFEANVVSEQEDIVHESILPDLDKVNHVEEIGSSGDDNTGNVKLSVKVESTPNNMLMHNLIGSVEESVPETIIPDTVEYTCEMCQQVFESRHELLLHVPIHI*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01219230;
90% Identity
-
80% Identity
-