Adis054428.1
Basic Information
- Insect
- Anastatus disparis
- Gene Symbol
- -
- Assembly
- GCA_017163975.1
- Location
- JAFFSR010000268.1:5139358-5166578[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0056 1.9 11.6 3.0 1 23 179 202 179 202 0.95 2 16 6.3e-06 0.0021 20.9 3.4 2 23 209 231 209 231 0.97 3 16 3.4e-05 0.012 18.6 0.9 2 23 238 260 237 260 0.96 4 16 2.3e-05 0.0078 19.2 1.7 2 23 267 289 266 289 0.96 5 16 5.4e-05 0.018 18.0 2.6 2 23 296 318 295 318 0.96 6 16 1.1e-05 0.0038 20.1 2.9 2 23 325 347 325 347 0.96 7 16 1.8e-05 0.0061 19.5 0.8 2 23 354 376 353 376 0.96 8 16 0.0055 1.9 11.7 3.3 1 23 491 514 491 514 0.97 9 16 7.1e-06 0.0024 20.8 2.8 2 23 521 543 521 543 0.97 10 16 1.5e-05 0.005 19.8 2.1 2 23 550 572 549 572 0.96 11 16 5.4e-06 0.0018 21.1 1.5 2 23 579 601 578 601 0.96 12 16 1.4e-05 0.0049 19.8 3.7 2 23 608 630 608 630 0.97 13 16 5e-06 0.0017 21.2 1.5 2 23 637 659 636 659 0.93 14 16 3.9e-06 0.0013 21.6 1.0 2 23 666 688 665 688 0.95 15 16 0.0012 0.39 13.8 1.2 2 23 695 717 694 717 0.91 16 16 2.8e-05 0.0096 18.9 0.4 2 23 722 743 721 743 0.97
Sequence Information
- Coding Sequence
- ATGAGAAATGAACCTTTAGATTTAACAAATGATCAAACTCGTAATTTGGTTAATATAAAGAATGATCCAGATAGTATTAAATCTGAGCAATGCGATAACACTGGAATATTTTCAGGATCACCTTTATCAAAAATATATGACGCTAAAGATTTAGTGAAGTTAGATTTAAAACATTTGCCAACAGCAATCATCAAACATGAATCAGTGGATATCAAAGTTGAAACTCATGACTCAGATCTAACGCCAATAACAACTGATCTTGAAACTAGTTTAATTTCTATTAAGGATGAAAGTTTCGGAAAATATGACGCTAAAGACTTAGTAAAGTTAGATTTAAAACATTTGTCAACAGCAATCATCAAACATGAACCAGTGGATATCAAAGTCGAAATTCATGGCTCAGATTCAACGCCAATGACAACTGATCTTGAAACTAGTTTGATTTCGATTAAAGATGAAAGTTTCGGAAAActtgaagattttaaagatgCTTTCTGTGATAAAAATTTAGCTGAATCTCGGGATATCTTTGGCCATATTTGTAAGACATGTAATAAAACATTTCTACGTAAatggtatttaaaaattcacgaaCAGAGAgtacacttaaaaataaaacatgcaAAATGTACTTATTGTGACAAATCTTTTACTCAAATGGGTCATTTAAAAAATCACGAGAAAACAGTTCATTTGAAGATTCGAGACTGGAAGTGTGATCtctgtgaaaaatattttagcaaaaagagTAGTTTAAAAGTTCATGAACAAACAGTACATTTGAAAATTCGAGATTGGAAGTGTAATCTTTGCAACAAATCTTTTTCTCAAATGgctcatttaaaaattcacgagAAATCAGTGCATTTAAAAATCCGAGACTTGAAGTGTAATTTATGCGACAAATATTTTACTCAAATGAGTCATTTAAATCTTCACGAGAAAACAGTTCATTTGAAGATTAAAAATGCGAAGTGTACTCATTGCGACAAATCTTTTACTCGAATGGCTTATTTAAAACGTCACGAAGAAACAGTTCATTTGAAGATCCGAGACTGGAAGTGTAATCTCTGCGACAAAGATTTTAGCGAAAAGGGTAGTTTAAAACGTCACAAAGAAACAGTTCATTTAAAAAACTGGCAATCTTATAATTTGGTTAATATAAAGAATGATCCAAATAGTTTTAAATCTGAGCAATGcgataatactgaaatattttcAGGATCACCTTTATCAAAAATATATGACGCTAAAGACTTAGTAAAGCTAGATTTAAATCACTTGTCAACAGCAATCACCAAATATGAATCTGTGAATATCAAAGTTGAAACCGATGGCTTAGATTCAACGCCAATGACAACTGATCTTGAAACTAGTTTAATTTCGATTAAGGATGAAAGTTTTGGAGAACttaaagattttgaagatgcttTCTGTGATGAAAATTTAGCTGAATCTCGGAACACTTGCTAcatttgtaaaatatgtaataaaacatttctttgtaaagagaatttaaaacgTCACGAGCAGACAGTCcacttaaaaattaaacatgcaaAGTGTACTTATTGTGACAAAACTTTTACTCAAATGGGTCATttaaaagttcatgaaaaaacaGTACATTTGAAAATCCGGGACTGGAAGTGTAATTTGTGCGATAAATATTTTACCTATAGGTCTAATTTAAAACTTCACAAGAAAAGTATCCATTTGAAAATCCGGGACTGGAAGTGTAATTTTTGCGACAAATATTTTACCGATAAAAGTACTTTGAAAGTTCACGAAAAAACAGTTCATTTAAAGGTTAAAAATGCAAAGTGTACACATTGCGACAAATCTTTTACTCAAATGAGTAGTTTAAGACTTCACGAGAAAACAATACATTTGAAAATTCGAGATTGGAAGTGTGCTCATTGCGACAAATCTTTCACTCAAAAGGGTAGCTTAAAAAATCACGAGAAAGCAGTGCATTTAAAAATCCAAGACTGGAAGTGTAATCTTTGCGATAAATATTTTACGGAAAAGTCGAATTTAAAACGTCACGAAGAAACAGTTCATTTAAAAGTTCGAGATTGGAAGTGTAATCTCTGCGACAAACATTTTGGCGAAAAGGTTACTTTAAAACGTCACAAAGAAGCAGTTCATTTGAAAAACTGGCAATGTAATATTTGTGAGaaaagttttgcaaaaaaagtGAATTTAGATTCTCACAGTAGAGTTCATTCAATTGATTTTAGTTag
- Protein Sequence
- MRNEPLDLTNDQTRNLVNIKNDPDSIKSEQCDNTGIFSGSPLSKIYDAKDLVKLDLKHLPTAIIKHESVDIKVETHDSDLTPITTDLETSLISIKDESFGKYDAKDLVKLDLKHLSTAIIKHEPVDIKVEIHGSDSTPMTTDLETSLISIKDESFGKLEDFKDAFCDKNLAESRDIFGHICKTCNKTFLRKWYLKIHEQRVHLKIKHAKCTYCDKSFTQMGHLKNHEKTVHLKIRDWKCDLCEKYFSKKSSLKVHEQTVHLKIRDWKCNLCNKSFSQMAHLKIHEKSVHLKIRDLKCNLCDKYFTQMSHLNLHEKTVHLKIKNAKCTHCDKSFTRMAYLKRHEETVHLKIRDWKCNLCDKDFSEKGSLKRHKETVHLKNWQSYNLVNIKNDPNSFKSEQCDNTEIFSGSPLSKIYDAKDLVKLDLNHLSTAITKYESVNIKVETDGLDSTPMTTDLETSLISIKDESFGELKDFEDAFCDENLAESRNTCYICKICNKTFLCKENLKRHEQTVHLKIKHAKCTYCDKTFTQMGHLKVHEKTVHLKIRDWKCNLCDKYFTYRSNLKLHKKSIHLKIRDWKCNFCDKYFTDKSTLKVHEKTVHLKVKNAKCTHCDKSFTQMSSLRLHEKTIHLKIRDWKCAHCDKSFTQKGSLKNHEKAVHLKIQDWKCNLCDKYFTEKSNLKRHEETVHLKVRDWKCNLCDKHFGEKVTLKRHKEAVHLKNWQCNICEKSFAKKVNLDSHSRVHSIDFS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -