Adis001222.1
Basic Information
- Insect
- Anastatus disparis
- Gene Symbol
- -
- Assembly
- GCA_017163975.1
- Location
- JAFFSR010000004.1:4952505-4961703[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 3.1 1.1e+03 3.0 1.3 3 22 128 147 126 149 0.75 2 24 2 6.7e+02 3.6 5.6 1 23 156 179 156 179 0.95 3 24 1.9e-05 0.0063 19.4 0.1 2 23 186 208 185 208 0.94 4 24 0.00015 0.05 16.6 0.8 1 23 243 266 243 266 0.97 5 24 0.0095 3.2 10.9 3.7 2 23 273 295 272 295 0.96 6 24 0.0085 2.9 11.1 5.9 1 19 305 323 305 328 0.90 7 24 0.00053 0.18 14.9 2.9 1 23 334 357 334 357 0.92 8 24 0.00097 0.33 14.0 2.1 2 23 364 386 363 386 0.93 9 24 4.9e-05 0.017 18.1 2.9 2 23 393 415 392 415 0.95 10 24 6.4e-07 0.00022 24.0 2.6 1 23 421 444 421 444 0.98 11 24 1.1e-05 0.0039 20.1 3.4 1 23 450 473 450 473 0.98 12 24 1.9e-05 0.0064 19.4 3.3 2 23 480 502 479 502 0.96 13 24 0.00067 0.23 14.5 0.8 1 22 508 529 508 529 0.94 14 24 3.1 1.1e+03 3.0 1.3 3 22 650 669 648 671 0.75 15 24 0.0021 0.72 13.0 6.7 1 23 677 700 677 700 0.95 16 24 1.7e-05 0.0058 19.6 0.1 2 23 707 729 706 729 0.95 17 24 2e-05 0.0067 19.4 0.8 2 23 740 762 739 762 0.92 18 24 7.1e-05 0.024 17.6 5.3 1 23 768 791 768 791 0.97 19 24 0.00011 0.036 17.0 0.1 2 23 798 820 797 820 0.92 20 24 0.00045 0.15 15.1 0.6 2 23 827 849 826 849 0.91 21 24 4e-06 0.0013 21.6 2.0 2 23 856 878 855 878 0.97 22 24 8.8e-06 0.003 20.5 3.6 1 23 884 907 884 907 0.97 23 24 5.9e-06 0.002 21.0 2.7 2 23 914 936 913 936 0.97 24 24 0.0022 0.75 12.9 1.3 1 23 942 966 942 966 0.91
Sequence Information
- Coding Sequence
- ATGGTTGACTTAAAAATTTGgATTCCGTCAAACATCTCTAATGATTTGGTCAATATCAAAAAAGAAATTCCTGACACTGAAGAAGGATGTGATAATTTGATTGGTTCTTCAATGCTAACTAATAATGAAACTGATTATTCAATCAATATAAAGGTTGAATCATCTAGTATCCAACTCATAAATAACACCAGCAGTCAAATACTTTCACAACCTTTTTCTTCAGAAACaCCTGATGTAAAATACTCGATTGGAAAAAACACAAATGAAGTTTCAACGTTAATTTTAAAACACGAATTAATAGATATTAAAGAAGAAAGCTACGATGAATTGgcagattttgaaaattattgttttaattcaATTGAATCCAAGAAAAAGCATTGCGATGTTTGTGGCAAAGGTTTCTTGTCACAACGCATCATGACACGCCATTTTAAGGAGGTGCACGCCACCGCAATAAAAAAGCATATTTGTCATACATGTAAGGAAGAATTCGTTTGTAAAAACCAATTAAAACTGCATGAACTCACAGAGCATCCAAAGGTTAATAAATGGAATTGTGCTGATTGCGAAAAATCTTTCAAGTCTAAAGAAGATTTGATACTTCACATGAACGCGATACACTTAAAAATTCAAGCtggctctaaaaaaaatcattgcgATGGTTTTTCGTCACAAGATAAGTTAAAAAGCCATTGTCGGGAAGTGTACGCagcaataaaaaagtatatttgtcGAATATGTCAAAGAGAATTTGGTGATAAATACAAATTGAAACGACATGAACTCACGGTACATGTAAATGTTCTAAAATGGAAGTGTGCAGAATGCGAGAAATCTTttaaatgcaaagaatatttGAAACTTCACATACACACGGTACACTTGAAAATTCGAGCTGGCTCTAAGGAACATCGTTGCAATGTTTGTAGTAAAGATTTTTCGTCACAAGATACGTTCAAACGACATTGTAAGGAGGTGCATGCCGAAATAAAACAGCATATTtgtcatatatgtaaaaaagCATTCGTCCGTAGAAACAAATTGAATCAACATAATATCATGGTACATCTGAATGTTCGAGAATGGAAGTGTGCAGAATGCGAAAAATCTTTTAAGAATAAACAACATTTGAAATTTCACATAAACGCCATGCACTTCAAAATTTTAGATTGGAAGTGTACTCAATGCAAAAAAGTTTTCACTTCCAGAGTAAATTTGAAATCTCATGAACACACCGTACACCTAAAAATACATAGTTATAAGTGTGCAAAATGCAAAAAAGTTTTTACTCAGAAAACTAATTTGAAAAGTCACGAACGCACTGTACATTTAAACATACGTGATTTTAAGTGTACTCATTGCGATAAATCTTTTGCAACTAAAAAAGATGCAAAACGTCACGAAAACACAGTACACCTAAAAATCCGTGATTGGAAGTGTACAAAATGCAAAAAATCATTCATCAGTAGAACTCATTTAATACGGCATGAAAACACTATCCACACAAAAGACAAAGCTTATGCATGTACTATTTGCTACAAaacttttagtttaaaaaaaactttagaatcgCATGAGCGCAGGATTCCGTCAAATATCTCTAATGATTTGGTCAATATCAAAAAAGAAATTCCTGACACTGAAGAAGGATGTGATAATTTGATCGACTCTTCAATCCTAACTAATAATCAAACTGATTATTCAATCAATATAAAGGTTGAATCATCTAGTATCCAACTCATAAATAACACCAGCAGTCAAATACTTTCACAACCTTTTTCTTCAGAAACaCCTGATGTAAAATACTCGATTGGAAAAAACACAAATGAAGTTTCAACGTTAATTTTAAAACACGAATTAATAGATATTAAAGAAGAAAGCTACGATGAATTGgcagattttgaaaattattgttttaattcaATTGAATCCAAGAAAAAGCATTGCGATGTTTGTGGCAAAGGTTTCTTGTCACAACGCATCATGACACGCCATTTTAAGGAGGTGCACGCCGCAATAAAAAAGCACATTTGTCATACGTGTAAGAAAGAGTTCGTTCATAAAAACCAATTAAAACAGCATGAACTCACAGAGCATCCAAAGGTTAATAAATGGAATTGTGCTGATTGCGAAAAATCTTTCAAGTCTAAAGAAGATTTGATACTTCACATAAACTCGATACACTTGAAAATTCGAGCTGgttcaaaaaaaattcattgcgATGTTTGCGGCAAGGGTTTTTCCTCACAAGATAAGTTGAAACGCCATGGTAAGGAGGTGCACGAAGCAATAAAAAAGTATAGGTGTCGTACATGTAAGAAAAGATTTGCTCATAAAAGCAAATTGAAACGACATGAACTCACGGTACATCTGAATATTCGAAAATGGAAGTGTGCAGATTGCGAAAAATCTTTTAAGGCTAAAGACCAATTGAAAATTCACATTGACGCAGTACACTTGAAAATTATGAATTGGAATTGTGATTCTTGCAAAAAAGGTTTCGCCCAGAAAGCTACTTTGAAAAAACATATAAGCTTTGTACACTTACATTTACGGAATTGGAAGTGTACTCAATGCGAAAAAGTTTTTACTTCCAACGCTCATTTAAAATCTCACGAACGTACTGTACATTTAAACATACGTGATTTCAAGTGTACTCATTGCGATAAATCTTTTGCAACTAAAAAAGATGTGAAACGTCACGAAAGCACAGTACATTTAAAAATCCGAGATTGGAAGTGTACAAAATGCAAAAGATCATTTATCAGTAAAGCTCATTTAATACGACATGAACGCACTATCCACTCGAAAAACAAAGCTTATGCATGTGCTGTTTGCtacaaaacttttaaattaaaaaaatctttagaaTCACACGAGCGCATGTACAAGCACCCTGAAAGATGTGAGACAGGAAGTTAA
- Protein Sequence
- MVDLKIWIPSNISNDLVNIKKEIPDTEEGCDNLIGSSMLTNNETDYSINIKVESSSIQLINNTSSQILSQPFSSETPDVKYSIGKNTNEVSTLILKHELIDIKEESYDELADFENYCFNSIESKKKHCDVCGKGFLSQRIMTRHFKEVHATAIKKHICHTCKEEFVCKNQLKLHELTEHPKVNKWNCADCEKSFKSKEDLILHMNAIHLKIQAGSKKNHCDGFSSQDKLKSHCREVYAAIKKYICRICQREFGDKYKLKRHELTVHVNVLKWKCAECEKSFKCKEYLKLHIHTVHLKIRAGSKEHRCNVCSKDFSSQDTFKRHCKEVHAEIKQHICHICKKAFVRRNKLNQHNIMVHLNVREWKCAECEKSFKNKQHLKFHINAMHFKILDWKCTQCKKVFTSRVNLKSHEHTVHLKIHSYKCAKCKKVFTQKTNLKSHERTVHLNIRDFKCTHCDKSFATKKDAKRHENTVHLKIRDWKCTKCKKSFISRTHLIRHENTIHTKDKAYACTICYKTFSLKKTLESHERRIPSNISNDLVNIKKEIPDTEEGCDNLIDSSILTNNQTDYSINIKVESSSIQLINNTSSQILSQPFSSETPDVKYSIGKNTNEVSTLILKHELIDIKEESYDELADFENYCFNSIESKKKHCDVCGKGFLSQRIMTRHFKEVHAAIKKHICHTCKKEFVHKNQLKQHELTEHPKVNKWNCADCEKSFKSKEDLILHINSIHLKIRAGSKKIHCDVCGKGFSSQDKLKRHGKEVHEAIKKYRCRTCKKRFAHKSKLKRHELTVHLNIRKWKCADCEKSFKAKDQLKIHIDAVHLKIMNWNCDSCKKGFAQKATLKKHISFVHLHLRNWKCTQCEKVFTSNAHLKSHERTVHLNIRDFKCTHCDKSFATKKDVKRHESTVHLKIRDWKCTKCKRSFISKAHLIRHERTIHSKNKAYACAVCYKTFKLKKSLESHERMYKHPERCETGS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -