Basic Information

Gene Symbol
-
Assembly
GCA_017163975.1
Location
JAFFSR010000220.1:18635035-18641574[-]

Transcription Factor Domain

TF Family
CG-1
Domain
CG-1 domain
PFAM
PF03859
TF Group
Unclassified Structure
Description
CG-1 domains are highly conserved domains of about 130 amino-acid residues containing a predicted bipartite NLS and named after a partial cDNA clone isolated from parsley encoding a sequence-specific DNA-binding protein [2]. CG-1 domains are associated with CAMTA proteins (for CAlModulin -binding Transcription Activator) that are transcription factors containing a calmodulin -binding domain and ankyrins (ANK) motifs [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 0.00018 10 8.5 0.0 26 64 258 296 242 330 0.73
2 3 0.00029 16 7.8 0.0 26 90 508 577 499 585 0.74
3 3 0.0034 2e+02 4.3 0.0 31 58 686 713 671 742 0.88

Sequence Information

Coding Sequence
atgagtTCAGTGTTTAACagaattattcatattattgcTTTCTTTTGTCTACTGTTACAAGTCAAAGCAGAAAATATCACATTGCGTAACTATGTTTCTCCAAATACTTCTAAATTTCAAGTAAAgtctttattatttgataaaccAACATTACCATTCGCATTTGTTCAACAAGTTAATGCATCTAAAAAACATGCATCGTATCAATATTCCTTTCCTAAATCTCAGCTGACAAATAATCCGGATATAGATGATTCAAGAATTTCATATGCATTGTGTGAGCCAAATAATTACAAGAAAAGGCATTGTAAAATTGTTCTTAGAGATATGactaaaaagaataataaagaaACTTACTGCAACATCACTTTGATGGCTGAGAGAGAAAGTGGAAAAATCAGTACTCAATTATTAACTTATCCATTTGGTAAAGATCGAGTTATATTTGTATACTTGGAGAATATCAAAGAAGAAAATGGCAAGAatgcaataattaaatttaataatttacgattaaatgattgtAAAATCAGTGAAACCCAAATCTTTATGGATACCAGAGGtatacaagtttttgaaaatctcCAAATTCTAACTTCCAAGGATTCTTATACAATTTCTAGTCCACATTTATGCAATATGTATAATAACTGTCGGATAAAGGTCAACGCTGAAGGCAAAATTATTACTCCCATGTATTCTGgcttaaatttaaaagatgcATACATAATATCGTCTCCATCTTATTCTCAAAATGAAGGTTATCTGATATTAAATACATCAAACATTGACGACCCAAAAAATGGCACATTATACTTTCTGGACAATAAAGgcTTGAAGGCATGGAAGAATTTCGAATACAATTTTGATGGGAGAAATGGACCCGTTATTCTCTCTGCGTCAGCTCATAATACTGTTGTTATTTGTTCATCTGCAAAAGCAAATATCAACTGCACAACTTTTGATTCAGAAGGCAACATCAAACTCGATACTACCATTGGCTTATCATGGAAACCCCCAGTAGCTGTAGGATATCCGTATCCTCTTCCAAATGATGGATTTTTATTGCTTGTCCACGAATCTTATTTTGCAGATTACGAAAATTTGGGGGATGAAACGTGCTTATATAATCGTTTGTACGTGAAAAAAATTGGCGCTGATGGAAAAGAAAGCTTTTTACCATTGGAGACCTTTGGTAAACTTGATAATGGTCGTCTCAGTACAGctcgaatttttgaaaataatattggagAATATTGTTTAAATGATTGTAAAATCAGTGAAACCGAAATCTTTATGGATGCTAGAGGCGTAGACGTTTTTACACATTTCCAAATTTTGACCAACACAGAGGATTATTATACTATTTCCAGCCCATTTTTATGCGATACGTACAATAACTGTCAGATAAACATTAATGATGAAGGTGAAGTCATTAATCCTATGTattctcatttaaatttaaaaaatccctTTATAATACCGTTTCAACCTCATCCTCCAAGTGAAAGTTATCTGATATTAAATACATCAAGCTTTTACGAACCAACAAATGGCACATTATACTTTCTGGACAATAAAGgatTAAAGGTATGGAAAAGTTTCGAATACAACTTTGAATCATGGGGCGAATATGAACCTGTCATTCGCTTTTCTTCAGCTCACAATACTGTTGTTATTTGTTCACCTTCAAAAGTAAATATTAACTGCACATATTTTGATTCTGAAGGCAACATTAAACTCGATACTGCCATTAGCTTATCATGGAAACCCCCAGTATTTACAGGATATCCATATCCTCTTCCTAATGATGGATTTTTATTGCTTGTCCACGAAAACTATTTTGAAGGTTTTGGAAATTTGAGGAATGAGACATGCTTATATAGACGTTTCCCATTTTTATGCTATACGCAGAAAAATTGCCGGATAAACTTTAATAACGAAAGCAAAGTCATTACTCCAACGTATTCTGATTTGAACTTAGTAAATGCTTTCATAACACCGTTTCAACCTCATCCTCAAAGTAACAGTTACCTGATATTGAATATATCAGACTTTTACGAACCAACAAATGGCACATTATACTTTTTGAACAATAAAGgatTAAAGGTATGGAAAAGTTTCGAATACAACTTTGAATCATGGGACGAGTACGAACCTGTCATTCGCTTTTCTTCAGATcccaataattttattatttgttcatctTCAAAAGCAAATATTAACTGCACATCTTTCGATTCGGAAGGCAACATCAAACTCGATACTACCATTGACTTATCATGGAAACCTCCAGAAACTGAAGGATATCCAATTCCTCTACCTAATAATGGATTTTTATTGCTTGTCCACGAAAATTATTTTGGTAATTTTGGAAAATTGGAAATTGAGACATGCGTATATAGGCGTTTGTacgtaaaaaaaattggaattgATGGAAAAGAAAGCTTTTTGCCGTTGGTCACCTACGGCAAACTTGATAGTAAACGTCAAGTTACAGTTCGAATTTTCGAAAATAATGCGGGAGAATATTGCGTTAGTCAAATGAGTACAGACTATTATTATGATGTGTGGACTTCAAAAACTTATCTTTTGAAATCTAGGATTGATTGTTTCACTGAAGAAGatgttaaatataatgaaaatgagTTAATTTATCAATGTAATGTGTAA
Protein Sequence
MSSVFNRIIHIIAFFCLLLQVKAENITLRNYVSPNTSKFQVKSLLFDKPTLPFAFVQQVNASKKHASYQYSFPKSQLTNNPDIDDSRISYALCEPNNYKKRHCKIVLRDMTKKNNKETYCNITLMAERESGKISTQLLTYPFGKDRVIFVYLENIKEENGKNAIIKFNNLRLNDCKISETQIFMDTRGIQVFENLQILTSKDSYTISSPHLCNMYNNCRIKVNAEGKIITPMYSGLNLKDAYIISSPSYSQNEGYLILNTSNIDDPKNGTLYFLDNKGLKAWKNFEYNFDGRNGPVILSASAHNTVVICSSAKANINCTTFDSEGNIKLDTTIGLSWKPPVAVGYPYPLPNDGFLLLVHESYFADYENLGDETCLYNRLYVKKIGADGKESFLPLETFGKLDNGRLSTARIFENNIGEYCLNDCKISETEIFMDARGVDVFTHFQILTNTEDYYTISSPFLCDTYNNCQININDEGEVINPMYSHLNLKNPFIIPFQPHPPSESYLILNTSSFYEPTNGTLYFLDNKGLKVWKSFEYNFESWGEYEPVIRFSSAHNTVVICSPSKVNINCTYFDSEGNIKLDTAISLSWKPPVFTGYPYPLPNDGFLLLVHENYFEGFGNLRNETCLYRRFPFLCYTQKNCRINFNNESKVITPTYSDLNLVNAFITPFQPHPQSNSYLILNISDFYEPTNGTLYFLNNKGLKVWKSFEYNFESWDEYEPVIRFSSDPNNFIICSSSKANINCTSFDSEGNIKLDTTIDLSWKPPETEGYPIPLPNNGFLLLVHENYFGNFGKLEIETCVYRRLYVKKIGIDGKESFLPLVTYGKLDSKRQVTVRIFENNAGEYCVSQMSTDYYYDVWTSKTYLLKSRIDCFTEEDVKYNENELIYQCNV*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-