Basic Information

Gene Symbol
ncor1
Assembly
GCA_017163975.1
Location
JAFFSR010000011.1:1956825-1974402[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 5.5e-09 3.1e-05 26.6 0.0 3 43 803 843 802 846 0.96

Sequence Information

Coding Sequence
atgtatattacatatatacatacagtgCCTGTAATATGTTTAGTgCCCCAGCAGAGCTACGGTTCGAGCTCACGTCAAGCGGTGTCTCCGCGGACGGTTGAGGGTAGCGGTGTCGGGGGCGGAGGCGTCGGAGGCGTCGGTGTCGTTGGAGGCGGCGCTGCGACTGCGGGGCCCCAAGGAGGAGGTGGCGGAGGTGGCGCTGGCGGGGGCGCAGCTGGCACCGGCGGCCCTGGCAGCGGCAGCCTCGTCGTCGTCCAAGGTGGTGGCGGCGCTGGCGCTCCAGGGGCTACGTCGTCGTCATCGTTATCATCATCACCCTTATTGTCACGCTACCCTCAACaaacatcattattatcatcgcAACAGCAGCAACAATATCAGCAGCACCACCAGCGAGATCGCGAAAGAGAACAGCAGCAACATCAGCAACATCAACAGCAGCCGCCGACTTTGCATCACTACTATCACCCACACTACCCCCATCACTTGCACCATCAGTATCAGGTCGCGGCAGCAGCAGCCGCAGCCGCCGCCGCCGCCTCCGGCAGCACCTCGTCATCATCGCCGGGATCGTTGGCGATGAACAGTGGCCCGGCTGGCGGCCCTGGCCAGCCACCGCAGGGATTACAAGCTTCATCCTCCACAGCTTCGCGTGACGCACGTGATCAGCACTCgcaACAGGGTACCGATCCAGGTCTTATTACGATAATGAATATCACAGTACCACCGGTAGTTCCAGTACCTGCGGGTCTGCGTTTTGTTCATCCCTCTTATCTGCCTCCTCCACAACCTCATCCACATCCGTCTTCGCAGTCAGTTGCTTCAGTAACTCAGGTGGCACAAGTTGCCTCATCTAATTCGGCCTCGCCCGTATCAGCTTCAGCAGGTCCGACCTCCATTGTACAGCAACAAGTTAGTCGGCAACAGCATCCACCTTCAGCACCATCGCCAGCATCTAGTGCTGCTGCAGCGTACACGAGGGATGTTTATCGAAACGCCAGTCCTAATGTGAATGAAAGGGTAGCGATAAGCATAAGTAGTAGTCCTGTGTCCTCGCAAGTGGTCGGAGTCGGCAGTGAATACGTGGTGAGCGGTCGAGGTGGTGATAGGCCGCGCATCTCCCTCCTGCCGGCTCCGGCCTCGATAGCTCCAGCGGCTTCGCCGACCGCGCCCACGGATTATCATACTGCTGCAGGAACACGTAATAATCGCGCAAGTGGCGGGCCTGTCGGCATCCTGGCAATGCAACCACAGGATTACCGTCCAAGTCCTGTTGACATGGCACAGCTGCAACAAGATGCACCACCTTTTAAGAAAATTCGTCTCGGACAGCCTACTCAACAACTGCCACCAACTCAGCAACAACAAGcgcagcaacaacaacagcaacagtcGATATCGCAAACAGAATGTCAAAGAATTACAAGTGCGCAAGACTCGttgattaataaacaaaaacatatacAGCAGTTGCCACCTCTAAGGATAGACACGAGGacGACGGGTGCTTACACGCCACAAACAGAAGCGATCTCACCAACACTCCCAGAGCCTAACACTCAAGAGGATGCTGCTTTTAGAAGTACTAAAGACGATCTCCTTCAGCAGATCGCTAAGGTTGATCGGGAAATTGCAAAAAGGGAATCACAAATTACCAAATTacggaaaaaaatgaaagaattagAAGAAGTAGCTAATCAACCCTTGGAAGGACCCGGTTCAAAGCGACCCACCGAAGAGGCGTCTCTACAACCTAAGCATCAATCTcttgtacaaaaaatttatgctgAAAATAGGAAAAAGGCGGAAGATGCGCATAAACTACTGGATAGGCTGGGCCCGAAGGTGAAACTGCCACTGTATAATCAGCCCTCGGACACAAGCATATACCAGGAGAACCGCCAGAAGCATCAGTGCATGAAGGCGCGTCTTGTAAACAGACTACGTGATGAGCACACGGAACGCGCTTCCTTACACCGTCAGCAATCACAAACCTATGCGATACTCGTGCAAGAATGGCATCGTAAGGTAGAAAAATTAGAATCAACGCAGAAGCGTAAGACGAAGGAAGCTAAGAACCGTGAGTTCTTCGAAAAAGTCTTCCCGGAGCTTCGTAAACAGCGCGAAGACAAAGAACGCTTCAATAGGGTTGGTGCACGTGTTAAAAGCGAAGCTGATATAGAAGAAATAATGGACAGTCTGCAAGAGCAGGAGGAAGAGTTGTCGACCGAATTAAAAAATGCGTTGAAAGCTCGTCAGATGGAGGAGAAAAAGATGCGTTCATATGCTGTGATCCCACCGTTGCTACTTGATGCAAAGCAGCGAAGAATCGCATTTCAGAATCACAATGGTCTACTGCAACCAGAAGAGCTTGAGGCACTGCATAGCGAAAGAAAACTAATCAACGTCTGGAGTCAGACGGAGCACGAAATGTTTAAGGAGAAATATCTCCAGCATCCCAAGAACTTCGGAGCGATAGCCCAATCGTTCGAGCACAAGTCTGTGTCAGACTGCGTGCATCACTACTACCTCACTAAAAAAGCGGAGAATTATAAGCAGCTATTACGAAAGTCGAGGCGTACGCGTAGTTCTCGAAATAACCCTAATAATAAGgtaaATAATAGTAACTCCACTATCGGACCTATAGATATATTAACGACGGGAGTAACGACGAGGCTGCAGCGTGAGCAGCAACAAAAAACCCAAGAGAATCCTCAGAATAGTGCGGCAGCGTCGAGTAGTAGTAATGCTGCAAGCACCTCGACGACGACAATTTCATCTACGACATCGTCGTTGACATCAGCAGCGGTTACGAGTAGTTCCGTAGGTACGACGTCAACGTCCTCATCGAGGGATACCGGCAATGCTACAGCGAGCTCGTCCAGTAGTAGTAATGCCGCCGTAGCATCGTCGACGCGCAGTGGTAATAGTGCCGTCGTAGCGGCACTTTTATTACTAGACGGAACGTCGGAGCCTTCGACAACGACGGCGGCGACGACGACGATATCGTCGACGGCGTCTACAGTGGCGTCAGCATCCGTCCCGAGTACAAGCGCGTCGACGACGACGTTAAGTGTACTCACGACGACGTCCACGTCGTCGACTGGCTCCAAGGACAACCGCgaggcaaataaagaaaataaagaaattaagaCAGAACCCAAAGACACGAATCTTTGGATTCCATctcaaataattcacaaagataTCAAGGAAGAATCACAATCCAGCTCTGAAACACTTTCCAGTAAAGAAGTTATCAAaatcgTAGAAAATAAGGGTGCTCTGTCCTCGTCATCTAATACAAGCGCAACGAACACCAGTGGACAAGTTCTTGCAATCGTTGACTTACAAcaaaaagacaaaaagaaaGGTGCAGGTATTTCAAGCGGTTCGACTACCACCAGTAGgtcaaaagataaaaagaaagaaaatcatgCGACGCCGATGGAAACCAGCGATGAAGAAGCACAAGGTATTGATACGATTGATAATCGAGAAACGGTATAG
Protein Sequence
MYITYIHTVPVICLVPQQSYGSSSRQAVSPRTVEGSGVGGGGVGGVGVVGGGAATAGPQGGGGGGGAGGGAAGTGGPGSGSLVVVQGGGGAGAPGATSSSSLSSSPLLSRYPQQTSLLSSQQQQQYQQHHQRDREREQQQHQQHQQQPPTLHHYYHPHYPHHLHHQYQVAAAAAAAAAAASGSTSSSSPGSLAMNSGPAGGPGQPPQGLQASSSTASRDARDQHSQQGTDPGLITIMNITVPPVVPVPAGLRFVHPSYLPPPQPHPHPSSQSVASVTQVAQVASSNSASPVSASAGPTSIVQQQVSRQQHPPSAPSPASSAAAAYTRDVYRNASPNVNERVAISISSSPVSSQVVGVGSEYVVSGRGGDRPRISLLPAPASIAPAASPTAPTDYHTAAGTRNNRASGGPVGILAMQPQDYRPSPVDMAQLQQDAPPFKKIRLGQPTQQLPPTQQQQAQQQQQQQSISQTECQRITSAQDSLINKQKHIQQLPPLRIDTRTTGAYTPQTEAISPTLPEPNTQEDAAFRSTKDDLLQQIAKVDREIAKRESQITKLRKKMKELEEVANQPLEGPGSKRPTEEASLQPKHQSLVQKIYAENRKKAEDAHKLLDRLGPKVKLPLYNQPSDTSIYQENRQKHQCMKARLVNRLRDEHTERASLHRQQSQTYAILVQEWHRKVEKLESTQKRKTKEAKNREFFEKVFPELRKQREDKERFNRVGARVKSEADIEEIMDSLQEQEEELSTELKNALKARQMEEKKMRSYAVIPPLLLDAKQRRIAFQNHNGLLQPEELEALHSERKLINVWSQTEHEMFKEKYLQHPKNFGAIAQSFEHKSVSDCVHHYYLTKKAENYKQLLRKSRRTRSSRNNPNNKVNNSNSTIGPIDILTTGVTTRLQREQQQKTQENPQNSAAASSSSNAASTSTTTISSTTSSLTSAAVTSSSVGTTSTSSSRDTGNATASSSSSSNAAVASSTRSGNSAVVAALLLLDGTSEPSTTTAATTTISSTASTVASASVPSTSASTTTLSVLTTTSTSSTGSKDNREANKENKEIKTEPKDTNLWIPSQIIHKDIKEESQSSSETLSSKEVIKIVENKGALSSSSNTSATNTSGQVLAIVDLQQKDKKKGAGISSGSTTTSRSKDKKKENHATPMETSDEEAQGIDTIDNRETV*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-