Basic Information

Gene Symbol
lola
Assembly
GCA_017163975.1
Location
JAFFSR010000333.1:4504489-4521122[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 7.8e-10 9.8e-07 31.0 0.1 3 35 130 161 130 167 0.93

Sequence Information

Coding Sequence
ATGAAAGAAACGAAAGACCCAAgtCAGCGAAGAGCTCATTACTTAAAGAACTCGAATCACAATGAAAATTATTACCTCGTGCCGGCGCATAAAAACACAGCACCCGGATCTTACGCTTGTAGCAAATGCGGAAAAGTTTATCGCTGGTACAGAAATCTAACGACGCATCTTCGACTCGAATGCGGAAAAGAGCCAAGTGTTTTATGTCCTTACTGCCCTAGACAACCATCATCGCTTTTTCCGATAGTCAGACCAAGATTGCACGTTTGCCCGCGTTGCGGTCAAATGTACTCGTGGGCGTCAAATTTGCGAAAGCACTTGAAGATGGGATGCGTAATTTCACGACAGCCAAGTCGTCGCGGTAGACGTTTGAATCCAGTACCATTGGAAACAATGAAAGCCGCTTTGACGGCTTTGAATGAAGGTATGTCGTTCAGAAAGGCAGCGAAAACATTTGGCATTACCAAATCTACCTTACAACGTATAAGGGCTCAGCAACGCTGGAACGATGGTGATTATCAATACTTTGAAAGTTATGAATACCATGAACCACAAATGTCAACTGCTCCGTATTATCAAGATTTTGGAATTAATACTCAATCAGATGAAGAGGAAGTTATTATTAAAGTAGAGTTGACAGACgataaatgtaaagaaaaaaattttaccataaaACAGGAACCCATTGAAGATGaacaagaaatttttattattgaaaatgacgacaataaatttaaagaatttatcgTCAAACAGGAGTTTGATGAAGATGAATTTAGAGATCAACAAACTATCGTGcaacaaaaaattgataatgacaatagtgaaaatattgtatcaaagaaaaaagcttttgtaaataagaataaaacTATCAATCAACAAAAAGTTGTTGAAGATAATGTTACGGGAATAGAAGATGAAATtagtataataaagaaaaatgtgattgtaaataaaactaaagttaAAGTAATTGCTGAAAGAAGTACACAATATAAAGGAGATGATGATAGCGATGAAAGTGAAGATGAAGGCGAAGAAGATGATTTGGAGGATGAAGATTTTATGCTaaaagaagaagatgaagaaatggatgatgatggtgatgacgAGAATGTCTATGTAAATATTAGAGGAAAACAAAAACCAAATTTGGCAATAAACAAGAAAGTTTTCAGTGATAAGaggaaaattaataaacaaatgacAAATGttaaagaagaaattaaaatagcATTAAATAcTCCAGAAAAAatagcatataaagttataaccCCCTCCGAACGTAAGAGTATCGACACATTTGAAGGTTGGTGTATGCGTAATGTTGCCAGATACGATAGAAAACCATCTGCAACGTATGCGACAGCACCTCGTAAACCAGTTAATAATCTTTATAGAATGACAGCAAATCTTAGTATGGCTTTACAAGCACTTGACAGAGGAGGAGATATTGATATGGTAGCACAAATGTATGGTATAACCGAAGATAGACTGCGATCAATCAAAAGTATGGAAGATGCTGATCCAGCGTTAATATTGTATCTTCTAAACAACACTGCACTAACATTTCGTCTGCCATCGATAAGTCATAAGAAATATCCTTGCCCAATGTGCGGCAGAGCTTACAAAGTACAACGTTCATTAAGGCGGCACATGCAAATCGAATGCGGCAAGGCTCCTAAACATAAGTGTCCCTATTGCGATCATTATACTAAATATAAATCCAGCGTGTTAAAACACATTATGCACATACATCCTGATCTACCGTTGACTTatGAGGATCCTGATTATATTCATCAACCAAAGCAACGCCGATCACGTGGCTTAGGTCGTTTTGCGTGCGAAAATTGTGATAGACGCTATTACGACGTAAAGAATCTGAAGAGACACATAAGACAAGAATGCGGCAGAAAACCTACTTACCATTGCGTCCATTGTCCGTTTAAATCTTCTTATAAGAATCGCATTTTGATGCATCGCACTGCGCACATTGACGACGATACTGTCAGCTACCGGAATGtcaaatatattttgaatatgaCCAGCAACGTCAATAGCATTAACGTTTGTACTACGTGCGGTAAGTCATACAAGCACAAACATCATCTAAAACGTCATCGGGATTTTGAATGTGGCGTTGaaccaaaattcaaatgtaTGTATTGTCCGCACAAAACTCGTTATAAGGATAGTTTGATGAAACACGTATTGGCCAGACATGAACATATTTTGAAACAACAATCTAACGACGAAGATTTTGAAGCGATCAATGCAGAACGGTGGGATCCTAgaCGTTATTCAGCCTCTGCTTATAGTATACCGGTTTATCAACGTCGTCTACGTTCCAGCACCAGTGGCGAATCAATTTACAGATCCAATTTACCACGCAAACATCTATGCGGCGATTGTGGTCGAATCTTTAATAATCGCGCTTCGCTTGTACGTCATCGCGTTTACGAATGCGACGGATGTCAACCACCAAGCCGTCAACATCAGGCTGTTAAAAGGGAAAGAATACCGTTGAGCAGTAGAAGCAAAAGGAAACATGTTTGTGATAAATGTAACAAAAGTTATGCTTTCTTTACGTCATTATGGAGACATCAACATTATGAATGTGGTGTTGAGCCGAGATTTGTTTGTTCGGTGTGTAGAGTTAAATTTGCTCAGAAAAGTAATTTAGACCGTCATTATAGAGCAAGacatacataa
Protein Sequence
MKETKDPSQRRAHYLKNSNHNENYYLVPAHKNTAPGSYACSKCGKVYRWYRNLTTHLRLECGKEPSVLCPYCPRQPSSLFPIVRPRLHVCPRCGQMYSWASNLRKHLKMGCVISRQPSRRGRRLNPVPLETMKAALTALNEGMSFRKAAKTFGITKSTLQRIRAQQRWNDGDYQYFESYEYHEPQMSTAPYYQDFGINTQSDEEEVIIKVELTDDKCKEKNFTIKQEPIEDEQEIFIIENDDNKFKEFIVKQEFDEDEFRDQQTIVQQKIDNDNSENIVSKKKAFVNKNKTINQQKVVEDNVTGIEDEISIIKKNVIVNKTKVKVIAERSTQYKGDDDSDESEDEGEEDDLEDEDFMLKEEDEEMDDDGDDENVYVNIRGKQKPNLAINKKVFSDKRKINKQMTNVKEEIKIALNTPEKIAYKVITPSERKSIDTFEGWCMRNVARYDRKPSATYATAPRKPVNNLYRMTANLSMALQALDRGGDIDMVAQMYGITEDRLRSIKSMEDADPALILYLLNNTALTFRLPSISHKKYPCPMCGRAYKVQRSLRRHMQIECGKAPKHKCPYCDHYTKYKSSVLKHIMHIHPDLPLTYEDPDYIHQPKQRRSRGLGRFACENCDRRYYDVKNLKRHIRQECGRKPTYHCVHCPFKSSYKNRILMHRTAHIDDDTVSYRNVKYILNMTSNVNSINVCTTCGKSYKHKHHLKRHRDFECGVEPKFKCMYCPHKTRYKDSLMKHVLARHEHILKQQSNDEDFEAINAERWDPRRYSASAYSIPVYQRRLRSSTSGESIYRSNLPRKHLCGDCGRIFNNRASLVRHRVYECDGCQPPSRQHQAVKRERIPLSSRSKRKHVCDKCNKSYAFFTSLWRHQHYECGVEPRFVCSVCRVKFAQKSNLDRHYRARHT*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00080634;
90% Identity
iTF_00080634;
80% Identity
iTF_00080634;