Basic Information

Gene Symbol
JARID2
Assembly
GCA_017163975.1
Location
JAFFSR010000259.1:2818683-2827255[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.5e-22 1.6e-18 69.5 0.0 6 89 1460 1541 1456 1541 0.94

Sequence Information

Coding Sequence
atggttttaagtCGAAATGACAagagaaaaaggaaagaagGAGACCTTGTGGATCTCATGGATCCACTTGCTGAAGCTCCGAAaagaaccaAAATACACGCACAAAGAAAGTTTGCTCAAGGAGCAGCAACTCCTGTATTCAGTCCTACGAGCACACCtattaaagaaaaggaaaaagtaAAGCCTGCTGTTTTTACAGAGTTAATAACGCACAAGCGACCTAACACTGAAGACTTTTTAACATTCCTTTGTTTTCGAGgtaCATCGATACTGCCTCCAagtttaaatttctttagtaCAAGTTCCAAGAAAGATAAACAAGATGCACCAAAGTCAACTTCTCCTTCTACCCTGTTTTCAAAAGCAAATGGTGCATGCGGTAAGCCACCACCTGCAtcgaaaaatgaaaatcaatcaaCATCCGCTCCTCAGAAAGCAAATGCAACTAAAGAAAAATCTACTACTGTTTCCAAAAAACAAATATCTACTACTATACCTAAGACAATCAAACTTAAAACAACAAGCACTGCCATTCAAGCTTTGAAGAAAAAGTATCAAGAACAAAGGCTAGCCAAACAACGTTTGAAGAAAAAGTTCAAGCCAACTTCTATGAAAACTCGATCATGTGCTACTGTCATTGAACAAGCACCAGAGAAACCTGCAGCAGTAAAAGTAATAgcatctaaaaaaattatatcacaaataaaaaataaaagacatgGATTAAGAAGTACTGGTTTAGCCGAGCACGAGAAGAAAAGTTTACCTCTTAAATCCCTTAAGAAAAAACCACTTactacaaaattgaaaaagaaaattattaatgcaAAAGAAGACACATCTAGTATTGACTCGTTTTCATTAAAGAATAACACCAAAAAAGTTGTGACGAAAACAGTCTCAAATAAATCAATACAaaagaaacttttaaataaaaataaaaagcttgAAGTAAAACGTGTCACGCGTTCACGTGCTGACGTACCAACAAAGTCGGCTTCGCCAGCTCCTACGAATCCAACAAGGAGGCCTACGAGAAAAACGAAAGAAGCTGCTGCTGTTTATATGGAAATTCTTGGCAGAAAATTGGTAAGTCCAGATTTGGAAAACGATGATAATTTATCATTAGACAGTTTTCCAGAATTGCCAAATGCAAGAAAAATCGCACAAACGGAAAATGAAATTAAAGCTAAAGTTAAATCGTTAAAGACTACAGCAACTGCTAATGTTACAAcattaaaggaaaaagaaaaggatAAGGAAAAGAAATTTGGAAATAACATTagtagcagcagtaaaacaataaaaaagaagataacAAAACCAGTTTTACCATTAAAAAACAAACGTCTCGTTAAGGTACAAAAATACTGTGAGCTCAATAGTGACGATGAATCAGTCAGTTCGAAAGAGATGAACGAAGCAATCAAAGCATCTGTAGCCACGCGGCGATCCGCACCGGCAAGtactgttaaagttaaaaaattggATAATCGTACTCTCCGATCCAGCCGTAGTTTAGCAGCTAGAAAAAGCATTCCTAAAACAAATGAAACACAACATAGTTCTACTAATGATTTAacaaaatcagtaaaaaatgttgAAGTTCCAAATCCTGTTAAGGCTAACAAAGATATTAGCAATAATAAAGACGTGGGCAAAGAATCAACGCCTAAAGAGAAGTCGACAACAACTGTTAAACGAAAGCGAGAATCTATTGCTAATGAtaaagagaaagataaagacAAGGAGAAAGAAAGTCCTACTAAGCAAAAGTCTGAtgcgaaaaataaaagtaaaacaaatgatgttgaaattgaaTCTGAAGAAGAAAGTTTAGGTGCAGTTTTGcacaaaatgaagaaaaagaaagaaaatgaaaaagaagaatcgaatACTGAAGCAATGACGAAGAAAACAGCAGAACCAAAAATTACTAAGTCAACAACAACAGTAGCAACAACTGCAACGACAACAGTAACAGCAACAGCAACAATAACAACTGCAACGACAACAGTACCTGTAGCGATAACGAAATCTACGACGGTAGAGGCTCTGAAGACTCAAGCGGTTACGGAAAGCACAACAAAGATTTCAGACGACGAAGAATCATTCCGAGGTTTTGCTAAGAAAGCTATTTCCAAAGTTATAAGTACTTGCCAATTAAACGTTAAAGCAAATAGTTTGCTAGATGATATTGATAGTAAAGCAAACGTACTAAAAACGCATGACATTTTATCAGATTCAATTGGTTTAAAGGATACAAAGAAAATAGATATTAAAGTCTCTACAATGACGTTTCCTTGTATCAAGCCAATGCAGGATCAATTTATGGGTAGTAGCAATATGACGAGTACAGCAGCTAATGCTTCTGTTAAGTTGGAACCAGATTTTGGGGAATCAAAGaaacataaaaattcaaaggTAACCACCACACCTACTGCATCACTGAATATTATTGATATGCCCAAAACATTGACTCATGGACGCAAGGAACGCGTTAACATGTCAACAGAACAGATTGAGAAATGGTTGAACGAAAGCTCATTGGCCAAAGAAGAGAGCAAAGTAGAAATGGAAAGTGTATCGAATTTCAAATACGATTCAAGTCCATTACTTGAAAAATCTAAAACTGATATAACAATTCCAACGACACCAACGCATGGGCATCTTTCAATATCACCTAAAATACAGCATCTTGTGAGGCCGGTTAATGTAACTTTATCAAAGTTGTCGgatagattgaaaaaaaactcaTCGGCAATCAGCGCAAATAGATTTTTAAGCTCGGTTTTTCATACAAGTAGTCAAATTTCACCAGTCAAACCTCAGACAtctatttttgcaaaaagaacaCCGACAACTGAGAAAAAAGAAACGCCAAAAGAACCTCCATGTACTCCACCCAGTAGAAAAATGAGCAAAGATTCGTCTTTCAATGAAGATCACgCGGACAGTGATTTAATTTCAAAGTCGGATGCAAATTCAGTAGGAGACTCATCGGAGAAAAAGTCGATAAACAGCCCtgagaaaaaggttttttttcatCAACGAAAGCCTTTTCTGCCAAAAGTCAGAGAACGCAAGCCAGCAAGCAGCTCATCGGCATTCTCACCCGAAAACGAGAGCAGCGTATACGCGTTCGAGAGCGAGGCCGAAGTACCCGTGAATACACCATTTCGCAGAAAGGCAAGAGAACCAATTAAAGATCATTCTGgAATTATTGAGAAGGAAAAATCAGCGAGTGCTCAGTCAACTAGTAGCGAAGCAAAAGTTAAAAATGGTGAGGAAACAACGAAAGTTACCGAGCCTTTAAACTCGCGAGAGGAAGCTCGGAAGGACGAAGAAAAGTCGCCTCCGCTGTTGGAAAAAACAACTCCAAAAAACTTCGAGCTTCCGAAAAATTTCGCAGATTTAACAAATATACAAGTGTTACCACTAGACAAACTAACAACAAGCTGGAGCAATGTAAATTGTAGCGCATCGATAGCCGTTCAGGTAAACCTGGACGATCAAAAGCAACAGCAGCAAAACCAGCAACAGACAGCGGAGGTCAACAACGAGTCTAGTGCCACGCAAAAAAGTACCGAAATATCAACTCAAACAGATACCAATGCAGACAATGACGACGACGATAGTggacaattattttatattccaTTACAAGCGGTAACTCGTAACGGTTCAGCGCAAGGTGGTCAACAACTTATTCAAGGTGTAGCTGTTAAATTAGGAACAGAGGGACCAACGGGACCTAATCAAAGGGTATTACTTAAAGCAAAACTTGTAACGAAACCACCAATTTCGGTAGCAAGGTGTCCACCTATTGGAACTGTACAACCAACTGCTAGAACACCACAAAATACTAGTACAGAGCAAGTAGATATACCATCAACATCTACAGTTGGCACAGGCaatgaaagttttaaatttttggcTCCTCACGATAAAGGGACGAAAATCAAAGAGATACATAAAACACCGAgtactgaaaaaataattaaatcaccAAAAAGTAGAGACAGAAAAATGTCAGCAGATGGATTTACAAAAGGCGGAAAAAGAAGTCAAACGAAAACAAAACCAATTGAAATTCATTCCccaataaataaaacaactttTCCAAATACAAAAGAATCTAGCGATCAAGCTCGTCTCGTGGAAGCCCCGATTTTTCGACCTTCGGAAAAAGATTTCCAAGATCCATTagaatatattgataaaatacgCCCGATTGCTGAAAAGTTCGGAATTTGCAAAGTTGTTCCTCCTTCAAATTTTAAACCTGAATGTAAAGTTTCGGATGATATGCGCTTTACGGCTTATAATCAATATGTTCATAGAATGTTAAATCGTTGGGGTCCAAATGTAAAAGAAATGATGgctataaagaaatatttagctACACAAAGTATCACTTTAACTCAACCGCCGTGGattGGCGGTATGGAAGTTGATCTCCCACATTTGTATCAAACTGTACAAAACTTAGGTGGATTGAAGGAagttattgaaaagaaaaaatggcAGAAAGTAGCTGATGGCATGAAAATACCAAGATCCGCACAAGATCGAGTCACTAAATTGGATGACATCTACTGCAAATATTTACTTCCTTATGATACATTGTCGCAAGATGAAagagataaattatttaaggacgTTGAAGTCGATTgggtaaagagagaaaaaagagaaagacaagAAACACAATCTAATGAGGAAGATGATGATGACGAAGATAGTTCGGAAGAATTAGAAGAATGTATTGTAAAAggtCGTAACATGCCACTGAATGCATTTTATAGAATCGCACGTAATACGCAGCGCATGTGGTTTGGTGAACCACAGCGATCCACTACTGAAACAGAAGGTGCTGCAGCTGATGAAGTTGAAACTGCTTTTTGGAAACATGTCGTTGAGAAAAAGCGTCACGTTTGTGTACATGCCGCAAGTATAGACTCCAGTGGTCGTGGTTTTGGTTTTTCTGTTGCTAAAAATAGTCCCTTTGCTCGACATCCTTGGAATCTTAAAATACTTACTAATAATGCTGGTTCGATACTTAGAGCGCTTGGTCCACAAATGGgcGTAACGGTGCCGACACTACATGTAGGTATGTTGTTCAGTGCATGTTGTTGGTATCGTGATCCACATGGTTTACCGTGGATTGAATATTTGCATACTGGTGCTAAAAAGATTTGGTATGGTATACCTGATGAGCAAAATAATGCTTTTCGCAAAGCATTGACTAAAATGTTTCCaagatattgtaaaaataaaacaatttggCTACCTTCGGATACAGCTATGGTACCACCTAATATGCTAGTAAGCAATGGTGTACCTCTTTGTAAAACCGTACAAGAACCTGGCCAATTTATTATTGTCTTTCCTAAAGCCTTTACTTCAAGTATATGCACAGGTTACGTTGTTTCTGAGAGCGTTTACTTTGCTCAGCCTTCTTGGCTTGAGACTGCAGAACAAGTATTTCAAgatatACACAATAGTTGTGAgccttcaatattttcatttgaaagaCTGTTATTTAGCATTATCAATGATTCTAGATCTCATATTGATGTACTTAAACAGATTTTACCAACTGTTATTAAAGTTTGTGATATGGAAATAGAAAATCGCAAAAAGTTGAAAGAGTTAGGACTTACAAATATTGAGAAATTACCATTGCcagaaaatgaaaagaaaggtAAAGGGAAAAAGGTAAAAGAAGATGAAGGTGATTATGAATGTGATACATGTCGAGCAAACTTATTTGTTTCTCTAGTAAGCCACCCTATAGATGAAAGCATTTTTTGCCTAACTCATGCtatacaatatatagaaaagaaaaaacaagttttaaaaaattgcacaCTTATGTATACATACAGTGAGagTGAATTAAACGATCTTATTCACAAACTAAAGGACAGGATCGAAGCCAAATCTAAAAAGActaatcaaacaaaacaagctAAATAG
Protein Sequence
MVLSRNDKRKRKEGDLVDLMDPLAEAPKRTKIHAQRKFAQGAATPVFSPTSTPIKEKEKVKPAVFTELITHKRPNTEDFLTFLCFRGTSILPPSLNFFSTSSKKDKQDAPKSTSPSTLFSKANGACGKPPPASKNENQSTSAPQKANATKEKSTTVSKKQISTTIPKTIKLKTTSTAIQALKKKYQEQRLAKQRLKKKFKPTSMKTRSCATVIEQAPEKPAAVKVIASKKIISQIKNKRHGLRSTGLAEHEKKSLPLKSLKKKPLTTKLKKKIINAKEDTSSIDSFSLKNNTKKVVTKTVSNKSIQKKLLNKNKKLEVKRVTRSRADVPTKSASPAPTNPTRRPTRKTKEAAAVYMEILGRKLVSPDLENDDNLSLDSFPELPNARKIAQTENEIKAKVKSLKTTATANVTTLKEKEKDKEKKFGNNISSSSKTIKKKITKPVLPLKNKRLVKVQKYCELNSDDESVSSKEMNEAIKASVATRRSAPASTVKVKKLDNRTLRSSRSLAARKSIPKTNETQHSSTNDLTKSVKNVEVPNPVKANKDISNNKDVGKESTPKEKSTTTVKRKRESIANDKEKDKDKEKESPTKQKSDAKNKSKTNDVEIESEEESLGAVLHKMKKKKENEKEESNTEAMTKKTAEPKITKSTTTVATTATTTVTATATITTATTTVPVAITKSTTVEALKTQAVTESTTKISDDEESFRGFAKKAISKVISTCQLNVKANSLLDDIDSKANVLKTHDILSDSIGLKDTKKIDIKVSTMTFPCIKPMQDQFMGSSNMTSTAANASVKLEPDFGESKKHKNSKVTTTPTASLNIIDMPKTLTHGRKERVNMSTEQIEKWLNESSLAKEESKVEMESVSNFKYDSSPLLEKSKTDITIPTTPTHGHLSISPKIQHLVRPVNVTLSKLSDRLKKNSSAISANRFLSSVFHTSSQISPVKPQTSIFAKRTPTTEKKETPKEPPCTPPSRKMSKDSSFNEDHADSDLISKSDANSVGDSSEKKSINSPEKKVFFHQRKPFLPKVRERKPASSSSAFSPENESSVYAFESEAEVPVNTPFRRKAREPIKDHSGIIEKEKSASAQSTSSEAKVKNGEETTKVTEPLNSREEARKDEEKSPPLLEKTTPKNFELPKNFADLTNIQVLPLDKLTTSWSNVNCSASIAVQVNLDDQKQQQQNQQQTAEVNNESSATQKSTEISTQTDTNADNDDDDSGQLFYIPLQAVTRNGSAQGGQQLIQGVAVKLGTEGPTGPNQRVLLKAKLVTKPPISVARCPPIGTVQPTARTPQNTSTEQVDIPSTSTVGTGNESFKFLAPHDKGTKIKEIHKTPSTEKIIKSPKSRDRKMSADGFTKGGKRSQTKTKPIEIHSPINKTTFPNTKESSDQARLVEAPIFRPSEKDFQDPLEYIDKIRPIAEKFGICKVVPPSNFKPECKVSDDMRFTAYNQYVHRMLNRWGPNVKEMMAIKKYLATQSITLTQPPWIGGMEVDLPHLYQTVQNLGGLKEVIEKKKWQKVADGMKIPRSAQDRVTKLDDIYCKYLLPYDTLSQDERDKLFKDVEVDWVKREKRERQETQSNEEDDDDEDSSEELEECIVKGRNMPLNAFYRIARNTQRMWFGEPQRSTTETEGAAADEVETAFWKHVVEKKRHVCVHAASIDSSGRGFGFSVAKNSPFARHPWNLKILTNNAGSILRALGPQMGVTVPTLHVGMLFSACCWYRDPHGLPWIEYLHTGAKKIWYGIPDEQNNAFRKALTKMFPRYCKNKTIWLPSDTAMVPPNMLVSNGVPLCKTVQEPGQFIIVFPKAFTSSICTGYVVSESVYFAQPSWLETAEQVFQDIHNSCEPSIFSFERLLFSIINDSRSHIDVLKQILPTVIKVCDMEIENRKKLKELGLTNIEKLPLPENEKKGKGKKVKEDEGDYECDTCRANLFVSLVSHPIDESIFCLTHAIQYIEKKKQVLKNCTLMYTYSESELNDLIHKLKDRIEAKSKKTNQTKQAK*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-