Basic Information

Gene Symbol
-
Assembly
GCA_949128115.1
Location
OX421964.1:66718885-66730381[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 5.4e-08 0.00078 20.6 13.2 4 18 428 442 421 443 0.87
2 8 1.7 2.5e+04 -3.3 2.0 5 10 472 477 472 477 0.93
3 8 0.006 87 4.5 9.0 1 11 483 493 483 494 0.96
4 8 1.5 2.2e+04 -3.2 0.8 4 10 498 504 497 505 0.62
5 8 3.4e-10 4.9e-06 27.7 14.5 1 18 510 527 510 528 0.99
6 8 0.00053 7.7 7.9 12.8 1 19 567 584 567 584 0.91
7 8 2e-08 0.00029 22.0 14.7 1 19 620 639 620 639 0.97
8 8 0.02 2.8e+02 2.9 15.0 1 18 649 667 649 668 0.91

Sequence Information

Coding Sequence
ATGCCTGCGCGAGAAGTGTATAATCGAGTGATCAACTCCATCGATGTGCTGAAGAACCTGGCGCGATCGTTCGGCAAAGCCAGCACAGAAAAAGACGCACTGGGTATGCTGTCGAGCTACATGGAAACTGAACCTGCCTCAAAACTAGGTGCGTTCGAGACCAAACCGTACCGTTTGCACAAGTTGGACAGCGGCCCGTCGGCATTGGCATTGGTGAGCAAAGAAGAGGCGAGCAATTTCTACCGGGCGATGACCATCATACGCGCAATCGAAACGGCGACCGACAATTTGTACAAAGACAAGGCCATCAGAGGCTTCTGCCACTTGTACTCGGGCCAAGAAGCGGTGGCCGTTGGCGTACGGAGCGCTTTGAGACCGCACGACTGCGTCATAACTGCGTACAGAGCGCACGCATGGACCTATCTGATGGGGGTGCCTGTCTTGAACGTTCTGGCCGAACTGATGGGTCGAAAAAGCGGTTGCGCCAGAGGAAAAGGCGGTTCCATGCACATGTACGGCCACAACTTCTACGGCGGCAACGGCATCGTGGGCGCGCAGGTGCCGCTCGGCGTCGGCATAGCTCTGGCGGCCAAGTACAAAGGCTCCGACGGCGTCTGCGTGGCGTGCTACGGCGACGGAGCGGCCAATCAGGGACAGATCTTTGAATCGTTCAACATGGCCAAGATATGGAACCTGCCGTGCGTTTTCGTCTGCGAAAACAACGGCTACGGCATGGGCACCAGCGCGGAGCGATCTTCCGCCAGCACCGAATACTACAAACGAGGCGATTACATACCCGGCATCTGGGTGGACGGCATGGACGTCGTCACGGTGCGGGAAGCCGCCAGATTCGCGATCGAGCACTGCGCCAGCGGCAAGGGCCCCATCGTCCTGGAAACGGCCACGTACCGCTACTCGGGACATTCAATGTCGGACCCCGGCACGAGCTACAGGTCGCGCGACGAAATACTGGAGGTCCGTCGCACGCGAGACCCCATCGCGTCGTTCAGAGTCAAAACGATCCGTTCGGGTATGCTCACTCTCGATGAACTGGAAACAATCGACCATCAGGTCAAGAAGTCGATACGCGACGTCGTGGATAAGGCGAAGGTCGACGAAGAAGTCGGACCGGAAGAACTGACCGGAGACATTTACTGCTGCAATTTGGAATGCGGAATAAGGAACACCAATCCGTTCACGCCTTTACCCCATAAGAGCGTCGGAAAGCCTATGAACCAAATTTGCGGCAAGCGACTGAAATGTGGACAACCCTCGTCCCCCCATACGTGCGACCGGCCATGCCACGAAGGCgattgtccaccttgtttccaaaCGACGCTGGTCAGATGTCGCTGCGGTCACATGGATAAAGAACTGCCGTGTCAAGAGCTAACCACAAAAGCCGACGATGCCAGATGTGAAAAAAAATGCACCAAGAAACGTCTGTGTGGAAAACACCGCTGCAACCAGAGATGTTGCATCGAATTGGAACATTTTTGCCCTCTACCCTGCAACCACACTTTGAACTGCGGCCAGCACAGGTGCGAGAGGACCTGCCACAGCGGCAGATGCCCGCCGTGCATCGAGACCAGCTTCGACGAGCTCTACTGCGAGTGCGGCGCCAGCGTTCTGTATCCTCCCGTTCCGTGCGGGACGAGGCCGCCCGCGTGCAACAGTTCCTGTTCCAGGGCCCGCCCGTGCGGTCACGAGGTGAACCACACGTGTCATACTGGTGCTTGTCCTCCTTGTACGGTGCTGTGCAAGCGGTGGTGCTACGGCAAGCACGAGCAGCGTTCCGCCATCCCGTGCTACCAGGAGGACTTCAGCTGTGGCCGGCCGTGCGGCCAGCAGATGCCCTGCGGCACCCACAAGTGCGACAAACCGTGCCATCTGGGCCCGTGTCCTCTGCCTTGCAGGCAAAAATGCACCATCAAGCGCACCCAGTGCGGTCATCCCTGCGGAGCACCGTGCCACCAGGCGCCGTGTCCGAACACGGTGTGCAAATTCAACGTTCCGGTCACGTGCCAGTGCGGCCTGCAGAAGGCGACAAGACCTTGCATCGAGCTGGCCGACGAATACAAAGAACTGGAAATGCAGAGTCTGAAGGAGAAAATGTCCGATTTGCTCAAGGATCAATCCATCGACATCACCGACATCATCAATAAGCCGAAGAAAATGGCCGTGCTGAAAATTTTGGAATGCAATGAAGAATGCaaagttctcgaacgcaacagACGCCTCGCGATAGGCCTCCAGATCCGCAACCCGGACCTGAGCCAGAAACTGACGCCCCGCTATTCGGACTTCATGCGCGGCTGGGCGAAAAAGGACTCGAAGTTTTGCCAGAAAATCCACGACAAGCTGAGCGAACTGGTCCAGCTGGCCAAGCAGAGCAAGCAGAAAAGCCGCTCGCTGTCGTTCGAATCGATGAACAGGGACAAGCGCCACTTTGTCCACGAATATTGCGAACATTTCGGCTGTGAGAGTGCGGCGTACGACCAGGAGCCGAACCGGAACATCGTCGCCACGGCCTTCAAGGACAAATCGTGGCTGCCCAGCATGAGCCTCACGGAGGTGATACAGCGCGAGAACGGACAGCGGAAGGTGCCGGGGCCGATGCTGACCAGCAGCGGCGCCGCCGTGGGCAAGTCGGAAACGGTGGCCCTGAAGCTGCCCGGTCGTCTCACGAAAACCAGCACGCCACCCGAAGAACTGGTCGATTATTTTGATAATCCACCCACATGA
Protein Sequence
MPAREVYNRVINSIDVLKNLARSFGKASTEKDALGMLSSYMETEPASKLGAFETKPYRLHKLDSGPSALALVSKEEASNFYRAMTIIRAIETATDNLYKDKAIRGFCHLYSGQEAVAVGVRSALRPHDCVITAYRAHAWTYLMGVPVLNVLAELMGRKSGCARGKGGSMHMYGHNFYGGNGIVGAQVPLGVGIALAAKYKGSDGVCVACYGDGAANQGQIFESFNMAKIWNLPCVFVCENNGYGMGTSAERSSASTEYYKRGDYIPGIWVDGMDVVTVREAARFAIEHCASGKGPIVLETATYRYSGHSMSDPGTSYRSRDEILEVRRTRDPIASFRVKTIRSGMLTLDELETIDHQVKKSIRDVVDKAKVDEEVGPEELTGDIYCCNLECGIRNTNPFTPLPHKSVGKPMNQICGKRLKCGQPSSPHTCDRPCHEGDCPPCFQTTLVRCRCGHMDKELPCQELTTKADDARCEKKCTKKRLCGKHRCNQRCCIELEHFCPLPCNHTLNCGQHRCERTCHSGRCPPCIETSFDELYCECGASVLYPPVPCGTRPPACNSSCSRARPCGHEVNHTCHTGACPPCTVLCKRWCYGKHEQRSAIPCYQEDFSCGRPCGQQMPCGTHKCDKPCHLGPCPLPCRQKCTIKRTQCGHPCGAPCHQAPCPNTVCKFNVPVTCQCGLQKATRPCIELADEYKELEMQSLKEKMSDLLKDQSIDITDIINKPKKMAVLKILECNEECKVLERNRRLAIGLQIRNPDLSQKLTPRYSDFMRGWAKKDSKFCQKIHDKLSELVQLAKQSKQKSRSLSFESMNRDKRHFVHEYCEHFGCESAAYDQEPNRNIVATAFKDKSWLPSMSLTEVIQRENGQRKVPGPMLTSSGAAVGKSETVALKLPGRLTKTSTPPEELVDYFDNPPT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-