Amac033987.1
Basic Information
- Insect
- Anaspis maculata
- Gene Symbol
- -
- Assembly
- GCA_949128115.1
- Location
- OX421967.1:5742037-5744064[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.08 4.4 9.2 3.5 1 23 158 180 158 180 0.97 2 17 0.049 2.7 9.8 5.5 1 23 189 212 189 212 0.96 3 17 2 1.1e+02 4.8 2.0 1 20 219 238 219 241 0.90 4 17 0.0095 0.52 12.1 3.4 1 23 250 272 250 272 0.98 5 17 0.023 1.3 10.9 1.2 1 23 279 301 279 301 0.99 6 17 0.074 4.1 9.3 2.7 1 23 310 333 310 333 0.96 7 17 0.0073 0.4 12.4 2.0 3 23 344 364 342 364 0.96 8 17 0.0063 0.35 12.6 2.9 1 23 373 395 373 395 0.98 9 17 0.0012 0.064 15.0 3.7 1 23 402 424 402 424 0.97 10 17 0.0035 0.19 13.5 2.3 1 23 433 455 433 455 0.97 11 17 0.056 3.1 9.7 6.1 1 23 464 486 464 486 0.96 12 17 0.02 1.1 11.1 3.8 1 23 495 517 495 517 0.98 13 17 0.013 0.73 11.6 2.7 2 23 525 547 524 547 0.95 14 17 0.12 6.5 8.6 5.2 1 23 554 576 554 576 0.97 15 17 1.5 84 5.1 1.1 1 18 581 598 581 598 0.92 16 17 0.19 11 8.0 0.4 2 23 614 636 613 636 0.92 17 17 0.00035 0.019 16.6 3.1 1 23 645 668 645 674 0.98
Sequence Information
- Coding Sequence
- ATGGGTGTTTTTGTTCCGAGATTAGAAACGCCCATGGCTAGAAAATGGCGATGTGTGCAATGTTCGTACCAGTCCGAATGGCAATTCCAAGTCGTCCGCCACTTCCAGCGGAACCACGCCTACGTATATCCGGCCGAGCTGTTCCACGCCGCTATGCAACCAGAAAAATACCATCGGAACGGCGTCGAAACGTCGCTAAAGGTACCGCTACGCGAACACGACGTCGAAATCAAGAAACGCTCCGACTGGCACACATGCGAACACTGTCATTTCGTATCACATTCGAGCGTAACTTTCGTCAAACATTTTGATACCTGTCAAAGGCATGGCTTTGTTAAACCGAATGTACAACCGACTGCTCAGCCCAAAGCTCAACACGTATCCAAAGCTCGAGTTGAAGCTACAACTGAACCAATTCCGCAAAGTTTTGATTGTTCGCATCGTCACGCCGGTAGAGAAAACGCGAAGCGTTTCCATTGCGTGCATTGTTCGTACGAGACGGAACGCTTGAAAGCTTTGAAAAAGCACTTGCTGGTGCACTTGCCTGACGAAGCGTGTACTTGGTACGATTGCAAGCATTGCACGTACAAGGCTAAACAGAGAGGCAATTTGACACAGCACGTGTTGAAATGCCATGACGCCAACACCGTTTGGTACAAATGTtccaagtgttcgtataaaaACATCTGGAAAAGCAACTTGACGAAGCACATGCCGAAGCACACGCCAGACGAAGCGTGCACTTGGTACGCTTGCAAGCAGTGCTCGTTCAAGACCAAGCGTACGTATAGCCTGAAACtgcacatgctgaaacatgccGCCGATACGAACTGGTACCAGTGCtcggagtgttcgtatcgagcCATCAACAAGTTTTCTTGGGAGAAGCACAAGCTCACGCATGCACCGGCCGAAGCAATCGACTGGTACGAATGTCGGCGGTGTTCGTACAAAGGGAAAGACAAGTACTCGCTGAAGCAGCACGTGTCGCGACGACACGTGCCAGCCAACGAGATAAATTGGGTAAACTGCGAGCAGTGTTCGTTTCGCACAAAGCGCACCTacgatttgaaaaagcacatgttgcaacacgtCCCAGACGAACAAATCAACTGGTACCGTTGCGAACATTGCTTGTTCAAAGCGAAAAGCAAGGGCAATTTGACGACGCACATGCTGCAACATGACGTCAACGTGCGCTGGTTCGAGTGTCCAACATGTCCGTTCAAGACGAAGCGAAAGACGCATTTGAAAACGCACTTGTTGCAGCACGTTCCGGACGAAGCAGTCGACTGGCACGAGTGCACGCAGTGCGAGTTCAAAGCGAAACAGCGAGGCAATTTGAAGATACACATGCTGAAGCACGTTCCGGACGAAGCGGTGAACTGGTACAGGTGCTCGCAGTGTCCGTACAAGGGCCGTCACCAGAGCCACCTGAAGATCCACTCGTTCAAGCACGTCCCGGACGAAGCGGTGAACTGGTTCGAGTGTTCGCACTGCCCTTACCGGAGCCGGCGCGGGCAGCTGTTCAAGCAGCACATGACCACGCACGCCGGCGACGAGGCGCTGCTCAGGTGCGCCGAGTGTCCGTACCAAACGCGCAACAAGACCTGCCTGAAGTCGCACATCAGGCTGCGGCACGTCGCCGACGTCGCCTTGTACGATTGCCGGCGGTGCGCTTACAGGTCCAAGTCGAAGGACTGCTTGAAGAAGCACATGCTGAAGCACGGCACGACGGTGTACAAATGCACGGAGTGTTCGTACGAAACGAAGGACGAACGGTATTTGCGCAAGGTGCACGCAAAGACTCGCGCCGCCGAGGACGAGGTCGATTGGGTTCGGTGCgagcagtgttcgtacaaggcCAAGCGCAGGGGTCAGGTGAAGCGTCACGTTTCGGAGGTGCACGGCAAGGACGGCGAGATCAGGTGGTTTGAATGCACCGAATGTTCGCTTAAGACGAAGCGAAACAGCACTTTGAAGCAGCACATGTTGAAGCAGCACATGTTGAAGCAGCATCAGAAGTAG
- Protein Sequence
- MGVFVPRLETPMARKWRCVQCSYQSEWQFQVVRHFQRNHAYVYPAELFHAAMQPEKYHRNGVETSLKVPLREHDVEIKKRSDWHTCEHCHFVSHSSVTFVKHFDTCQRHGFVKPNVQPTAQPKAQHVSKARVEATTEPIPQSFDCSHRHAGRENAKRFHCVHCSYETERLKALKKHLLVHLPDEACTWYDCKHCTYKAKQRGNLTQHVLKCHDANTVWYKCSKCSYKNIWKSNLTKHMPKHTPDEACTWYACKQCSFKTKRTYSLKLHMLKHAADTNWYQCSECSYRAINKFSWEKHKLTHAPAEAIDWYECRRCSYKGKDKYSLKQHVSRRHVPANEINWVNCEQCSFRTKRTYDLKKHMLQHVPDEQINWYRCEHCLFKAKSKGNLTTHMLQHDVNVRWFECPTCPFKTKRKTHLKTHLLQHVPDEAVDWHECTQCEFKAKQRGNLKIHMLKHVPDEAVNWYRCSQCPYKGRHQSHLKIHSFKHVPDEAVNWFECSHCPYRSRRGQLFKQHMTTHAGDEALLRCAECPYQTRNKTCLKSHIRLRHVADVALYDCRRCAYRSKSKDCLKKHMLKHGTTVYKCTECSYETKDERYLRKVHAKTRAAEDEVDWVRCEQCSYKAKRRGQVKRHVSEVHGKDGEIRWFECTECSLKTKRNSTLKQHMLKQHMLKQHQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -