Amac033991.1
Basic Information
- Insect
- Anaspis maculata
- Gene Symbol
- -
- Assembly
- GCA_949128115.1
- Location
- OX421967.1:5753304-5755277[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.02 1.1 11.1 3.4 1 23 145 167 145 167 0.97 2 17 0.02 1.1 11.1 3.6 1 23 176 199 176 199 0.96 3 17 2.5 1.4e+02 4.5 6.0 1 23 206 228 206 228 0.96 4 17 6.8 3.8e+02 3.1 6.2 1 23 237 259 237 259 0.97 5 17 0.00058 0.032 15.9 0.4 1 23 266 288 266 288 0.99 6 17 0.1 5.5 8.9 6.8 1 23 297 320 297 320 0.98 7 17 0.029 1.6 10.6 0.8 3 23 331 351 329 351 0.96 8 17 0.0043 0.24 13.2 3.8 1 23 360 382 360 382 0.98 9 17 0.0011 0.062 15.0 3.7 1 23 389 411 389 411 0.97 10 17 0.00061 0.034 15.8 1.0 1 23 420 442 420 442 0.98 11 17 0.018 1 11.2 5.5 1 23 451 473 451 473 0.98 12 17 0.0057 0.31 12.8 3.9 1 23 482 504 482 504 0.98 13 17 5.7 3.1e+02 3.3 5.7 2 23 512 534 511 534 0.94 14 17 0.025 1.4 10.8 4.7 3 23 543 563 541 563 0.97 15 17 0.43 24 6.9 0.8 1 18 568 585 568 591 0.88 16 17 0.52 28 6.6 0.3 2 20 601 619 600 623 0.89 17 17 0.00026 0.014 17.0 3.0 1 23 632 655 632 655 0.97
Sequence Information
- Coding Sequence
- ATGACGGAGGAATGGCGCTGCGCGCAATGTTCGTACCAGTTCCAATGGAAATTCCAAGTCGACCACCACTTCCAGCGGAAGCACGCCAACGTGTATCCGGCCGAACCGTTCCACGCCGCCGTACAACTCGAAGAATATCGTCGCGACGGCTTCGAAACGTTGCTGAAGGTAACGCCACGCGAAGAAACCAAGAAACGCCTCGACTGGCACCGATGCGAACACTGCCATTTCGTCGCACACTCGAGCGTAACGTTCGTCAAACATTTCGACACCTGTCAAGCGTATGGCGGTGTTCAACCGACTGCTCAATCCAGCGTTCGAGCGACTGCTCAACCGACTATTCCCCATGCTCAACTCGTAACTAAAACTCAAGCTGAAGTCAAAACCGAACCAAGTCCGCATAGTTTCGATACCAGAGAAAACGCAAAGCGTTTCCATTGTGCGCACTGTTCGTACGAGGCGAAACGATTGAAAgccttgaaaaagcacatgctcGTGCACTTGCCTGACGAAGCATGCACCTGGTACGACTGCAAGCAGTGTTCGTATAAGGCCAAACGCAACGGCAATTTGAAACAGCACGTGTTGAAATGCCACGACGCCAACACCGTTTGGTACAAATGTTCGCATTGTTCGTACAAAAATATTTGGGAGAGCAATTTGACGAGGCACATGCTGAAACACATGCCAGCCGAAGCGTGCACTTGGTACGATTGCAAGGAGTGCTCGTTCAAGACCAAGTACAAGTGCAACATAAAACTGCACAAGTTGAAACACGCAGCCGATACGAACTGGTACCAGTGTTCGGAGTGTCCGTACCGAAGCATCAACAGATTTGCTTGGGAGAAACACATGCTCACGCATGCACCAGACGAGGCGATAAATTGGTACAGATGCGGGCAGTGTTCGTTCAAAGGGAAACACAAGCACTCGCTGAAGCAGCACATGCTGCGACGGCACGTTCCAGTCGACGAAATCGATTGGGTAAACTGCGAGCAGTGTTCGTTTCGCGCGAAGCGCACCGCCGatctgaaaaagcacatgttgcaacacgtCCCCGACGAACAGATCAACTGGTACCGGTGCGAACACTGCTTTTTCAAAGCGAAAAGCAAAGGCAATTTGACGACGCACATGCTGCAACATGACGTTAATGTGCGCTGGTTCGAGTGTCCAACATGTCCGTTCAAAACTAAGCGAAAGACGCATCTGAAAACGCACTTGTTGCAGCACGTTCCGGACGAAGCAGTCAACTGGTACGAGTGCACGCAGTGCGAGTTCAAAGCGAAACAGCGAGGCAATTTAAAGATACACATGCTGAAGCACGTTCCGGACGAAGCGATGAACTGGTACAGGTGTTCGCAGTGTCCGTACAAGGGCCGTCACCAGAGCCACCTGAAACTGCACGAGTCCAAGCACTTCCCGGACGAAGCGGTGAACTGGTTCGAGTGTTCGTACTGCTCGTATCGGAGCCGGCGCAGGCAGCTGTTCAAGCAGCACATGACCATGCACGCCGGCAACGAAGCGCTGCTCAAGTGCGCGCATTGTTCGTACGAAACGCGCAACAAGACCTGCTTCAGCTCGCACGTCAAGCTGCAGCACTCCGCCGACGTCACCTGGTACGGCTGCCAGCAGTGTCCGTACAAGTCCAAGACGAAGTTCTGCTTGAAGAAGCACATGCTGAAGCACGGCACGGTGGTGTACAAATGCACGGAGTGTCCGTACGAAACGAAGGACGAACGGTATTTGCGCAAGGTGCACGCAAAGACTCACGCCGCCGAAGACGAGGTCGATTGGGTTCGGTGCgagcagtgttcgtacaaggcgAAGCGCAGGGGTCAAGTGAAGCGTCACGCCGTCGAAGTGCACGGCAAGGAGGACGAAATCGAATGGTTCGAATGCACCGAGTGTTCGCTCAAGACGAAGCGTAAGAGCACTTTGAAGCAGCACATGTCGAAACAACATAGGAAGTAG
- Protein Sequence
- MTEEWRCAQCSYQFQWKFQVDHHFQRKHANVYPAEPFHAAVQLEEYRRDGFETLLKVTPREETKKRLDWHRCEHCHFVAHSSVTFVKHFDTCQAYGGVQPTAQSSVRATAQPTIPHAQLVTKTQAEVKTEPSPHSFDTRENAKRFHCAHCSYEAKRLKALKKHMLVHLPDEACTWYDCKQCSYKAKRNGNLKQHVLKCHDANTVWYKCSHCSYKNIWESNLTRHMLKHMPAEACTWYDCKECSFKTKYKCNIKLHKLKHAADTNWYQCSECPYRSINRFAWEKHMLTHAPDEAINWYRCGQCSFKGKHKHSLKQHMLRRHVPVDEIDWVNCEQCSFRAKRTADLKKHMLQHVPDEQINWYRCEHCFFKAKSKGNLTTHMLQHDVNVRWFECPTCPFKTKRKTHLKTHLLQHVPDEAVNWYECTQCEFKAKQRGNLKIHMLKHVPDEAMNWYRCSQCPYKGRHQSHLKLHESKHFPDEAVNWFECSYCSYRSRRRQLFKQHMTMHAGNEALLKCAHCSYETRNKTCFSSHVKLQHSADVTWYGCQQCPYKSKTKFCLKKHMLKHGTVVYKCTECPYETKDERYLRKVHAKTHAAEDEVDWVRCEQCSYKAKRRGQVKRHAVEVHGKEDEIEWFECTECSLKTKRKSTLKQHMSKQHRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -