Amac023616.1
Basic Information
- Insect
- Anaspis maculata
- Gene Symbol
- -
- Assembly
- GCA_949128115.1
- Location
- OX421964.1:82208018-82210117[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 4.5 2.5e+02 3.7 2.9 1 23 5 28 5 28 0.94 2 18 0.02 1.1 11.1 5.4 1 23 145 168 145 168 0.93 3 18 0.37 20 7.1 5.1 1 23 177 199 177 199 0.98 4 18 0.0011 0.061 15.0 2.2 1 23 208 230 208 230 0.98 5 18 0.00067 0.037 15.7 3.1 1 23 239 261 239 261 0.97 6 18 0.2 11 8.0 0.8 2 23 271 292 270 292 0.97 7 18 0.04 2.2 10.1 3.6 1 23 301 323 301 323 0.97 8 18 0.018 0.98 11.2 0.7 2 23 333 355 332 355 0.94 9 18 0.00048 0.026 16.2 2.7 1 23 364 386 364 386 0.98 10 18 0.3 16 7.4 5.9 1 23 395 418 395 418 0.96 11 18 0.43 24 6.9 3.4 1 23 427 450 427 451 0.94 12 18 0.0054 0.3 12.9 1.9 1 23 463 485 463 485 0.98 13 18 0.89 49 5.9 1.4 1 20 494 513 494 516 0.87 14 18 0.017 0.93 11.3 2.6 1 23 525 548 525 548 0.96 15 18 0.00069 0.038 15.7 0.9 2 23 558 580 557 580 0.94 16 18 0.0029 0.16 13.7 0.7 3 23 594 614 592 614 0.96 17 18 0.0001 0.0056 18.3 2.6 1 23 623 645 623 645 0.98 18 18 1 55 5.7 6.5 1 23 654 677 654 677 0.94
Sequence Information
- Coding Sequence
- ATGGATGTTGTACATCAGTGTCCGAAATGTTCGTACGAGTCTGATTTGAAGATCCAACTCGACCACCACTTCCAGAGGGCACACGTGAATGTTTATGCCGCCGAATTGTTCCATGCCATCGTAGAACCAGAACAATTTAAATGCAAAAGCTGCAGTTTCAAGTGTTACTACAATTGGGATCTGCGTGAACACTGCAATTTACACCTTCACGGCAGGGCCGAAGGAGAGAATTTGGAAGAAGGTTCATTTTGCAACGAAGCAGTCGACAAGTATTGTTGCAGCCACGGCAATTGCAGATTCGAAACGGATTCCAGTTTACTGCTTATCAAGCACATTGATTCGTGTGAACTGGCGACGGGGCGAGAAAACGCTGGGTTACAGGCAGATTCGATTGATGCTGCACATCTTGATGATTCGGATAAGGCCAAAAAACACGTATGTTCGCATTGTTCGTATAGATGTAAAACCATAGTTAACCTAAAGAGACACATAATCGCGAAACATGCCAAGGATGAAGAAATCGATTGGTTTTATTGTTACAAATGTACGTTCAGAGCCAAACACAAAAGGGGCTTGAAAATGCACATGATTCGACACGTCCCCAAAGACCAAATCGATTGGTTTCCATGCAAGCAATGTTCATATAAagccaaaacaaaaaataatttgaaaattcacatgACACGTCATGCCAGCGATGCTGATTTGAACTGGTTCATGTGCTACAACTGTTCGTATAAAACTACACGGAAAGgtaatttgaaaacgcacatgatGCAACACGCAAGGAATGAAGACATCGAATGGACCACTTGCAGCAAGTGTCCTTTCAAAGCGAGAAAAAAGGGTATTTTGAAAGCGCACATGCTGACTCACGCCACGGGTGAAGAAATCGATTGGTTTTGTTGCGCGAAGTGTTCGTACAGAGCCAAGGCCAAGAGCACTCTGAAACAGCACATGTTGACGCACGCCACAAGTGACGAAATTGATTGGCTCCCTTGCCCGAAGTGTTCGTACAGAGCCAAGGTTAAGAGCACTCTAAAAAATCACTATATGTTGAAGCATGCTGCGGCCGACGAGATCAATTGGTTCAAGTGTAAGGATTGTTCGTTCAAAAGCAAAGAAAAAGGCAacctgaaaaagcacatgttgttaCACGTCAAGGACGAAGAAATCGATTGGTACTCGTGCACCAAATGTTTGTTCAGAACAAAACACAGGGGCTGTTTGAATGCGCACATGAAGGCTAAGCACACCACAAGTGAAGACATCACTTGGTTCACGTGCAACAAGTGCCCTTCTTTCAGAGTAAAGCTGAGAGGAAGCTTGAAACGGCACATGAAGCTGCACCACGCCACCGATGTGAAAGACGAAGACATTGTATGGTTCACGTGCACCGAGTGCTCCTACAAAACCAAAGTAGAACAATACTTGAAAATTCATATGACGACACACGACACGAGCAAAAACGTCAAATGGTTCATGTGCAATAATTGCCCGTTCAAAACCAAGCACAAGTCCAGCTTGGGACCGCACATGTGGCGGCATGCCAGAAGCGAAGATATTGTTTGGTACAACTGCCTCGAGTGCTCACACAGGGCCAAAACCCAAAAGAATCTGAAGAAACACGTGCTGGTAAGGCACACCAGCAGCGATAAAATCGAATGGTTGCAGTGCCCCGAATGCCCGCACAAATCAAAAACGAAAGGCAACTTGAAGGTACACGTCACGAAGGTACACACCCCGAAAGACCAACTGGTCAAACCGGAATCGATCGCGTGCGCCACATGCGGCTTTACAACCATACATTCGTGGAGCCTGAGAAACCACATGTTGCGGCACGTCGCCGACGACCAGATCGACTGGTTCACGTGCGACAAGTGTTCGTACCGATCCAACCAGAAAAGCAACCTAAAAAGCCACATGGTAACACATGCCACCGGCGCAGAAATCGTGTGGCACGCGTGCAAAACGTGCTCGTTTCAGACCAAGCACAAGGACTATCTGAAAACGCACGTCAAGCAGCAGCACGGTTCCGGAAACGACTTGTTCTCGTGCGTCACGAGTGCTCCTTCCGCTCCAAAAGTCAGTTCAACCTGA
- Protein Sequence
- MDVVHQCPKCSYESDLKIQLDHHFQRAHVNVYAAELFHAIVEPEQFKCKSCSFKCYYNWDLREHCNLHLHGRAEGENLEEGSFCNEAVDKYCCSHGNCRFETDSSLLLIKHIDSCELATGRENAGLQADSIDAAHLDDSDKAKKHVCSHCSYRCKTIVNLKRHIIAKHAKDEEIDWFYCYKCTFRAKHKRGLKMHMIRHVPKDQIDWFPCKQCSYKAKTKNNLKIHMTRHASDADLNWFMCYNCSYKTTRKGNLKTHMMQHARNEDIEWTTCSKCPFKARKKGILKAHMLTHATGEEIDWFCCAKCSYRAKAKSTLKQHMLTHATSDEIDWLPCPKCSYRAKVKSTLKNHYMLKHAAADEINWFKCKDCSFKSKEKGNLKKHMLLHVKDEEIDWYSCTKCLFRTKHRGCLNAHMKAKHTTSEDITWFTCNKCPSFRVKLRGSLKRHMKLHHATDVKDEDIVWFTCTECSYKTKVEQYLKIHMTTHDTSKNVKWFMCNNCPFKTKHKSSLGPHMWRHARSEDIVWYNCLECSHRAKTQKNLKKHVLVRHTSSDKIEWLQCPECPHKSKTKGNLKVHVTKVHTPKDQLVKPESIACATCGFTTIHSWSLRNHMLRHVADDQIDWFTCDKCSYRSNQKSNLKSHMVTHATGAEIVWHACKTCSFQTKHKDYLKTHVKQQHGSGNDLFSCVTSAPSAPKVSST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -