Amac034060.1
Basic Information
- Insect
- Anaspis maculata
- Gene Symbol
- -
- Assembly
- GCA_949128115.1
- Location
- OX421967.1:6720351-6723002[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.026 1.5 10.7 4.2 1 23 5 28 5 28 0.97 2 19 0.00031 0.017 16.7 3.9 1 23 323 345 323 345 0.98 3 19 0.019 1 11.1 7.2 1 23 354 376 354 376 0.97 4 19 0.024 1.3 10.8 4.9 1 23 390 412 390 412 0.98 5 19 0.0033 0.18 13.5 3.1 1 23 421 443 421 443 0.98 6 19 0.86 48 5.9 4.4 1 23 452 474 452 474 0.97 7 19 0.073 4 9.3 3.6 1 23 483 505 483 505 0.97 8 19 0.21 12 7.8 3.8 2 23 515 537 514 537 0.93 9 19 0.0016 0.086 14.6 2.8 1 23 547 569 547 569 0.97 10 19 2 1.1e+02 4.8 8.3 2 23 579 600 578 600 0.96 11 19 0.0066 0.36 12.6 7.7 2 23 610 631 609 631 0.96 12 19 0.16 8.9 8.2 5.4 1 23 640 662 640 662 0.98 13 19 0.12 6.5 8.6 0.9 1 23 671 693 671 693 0.97 14 19 3 1.7e+02 4.2 5.1 1 23 702 724 702 724 0.95 15 19 0.00059 0.033 15.9 2.3 2 23 734 755 733 755 0.97 16 19 0.00013 0.0072 17.9 1.4 1 23 764 787 764 787 0.98 17 19 0.026 1.4 10.7 1.0 1 23 796 818 796 818 0.98 18 19 0.00017 0.0091 17.6 5.2 1 23 827 849 827 849 0.98 19 19 8.3 4.6e+02 2.8 3.2 1 23 858 881 858 881 0.93
Sequence Information
- Coding Sequence
- ATGGAGGAGACGCATCGATGTGCACAGTGTCCATACAAGTTTGGAAtgaagtttcaactggaacaccACATCCAAAGGACCCACAGGAACGTTTACGCGgcagaactgttccatgccatcgtGGAACCTCAGCAGTTGACATGCACTTGCTGCAGCTTCAAGGGTTATTACAACtgggacttgtacgaacactgcaaacacaaaCATCACGGCAGGATCGACGACAACATGGAGCGAAGCGAAGAGCCAAGTTCATTTTGCAACAAAGTATCCGACAATTATCCCTGCAATTATTGCCAGCACAAATCGGATTCAGGTTTGTCTCACGTGAAACACGTGTGTAAGATGACACAGAGGCTCACGATCAATCTAGCGAGGCTACCCGTCAATACCGCGATCAACGCTTCCGTTGTGGAACCGCAAATGACACAGAGGCTCACAGTCAATCTTACGAGGCTACCCCTCGGGCTACCCGTCAATGTCGTCAGCAACGATATCGTTGTGGAGCCGCAAATGACACAGAGGCCCTCAGTCAATCTTGCGAGGCTACCCGTCAATCCCGCGACCAACGATATCGTGGAGCCGCAAATGACACAGAGGCTCACTGTCAATCTTGCGACGCTACCCGTCAATCTCATGACCAACGATATCGTTGTGGAGCCGCAAATGACACAGAGGCTCACAGTCAATCTTACGAGGCTACCCCTCGGGCTACCCGTCAATGTCGCCAGCAACGATATCGTTGTGGAGCCGCAAATGACACAGAGGCTCTCAGTCAATCTTGCGAGGCTACCCGTCAATCCCGCGACCAACGATATCGTGGAGCCGCAAATGACACAGAGGCTTACGATCAATCTTGCGAGGCTCCCTATCAATCTCGCGACCAACGATTCCGTTGTGGAACCGCCTGTGCATACTGGAGGGCGTATCCGGAGATCAAACGCGATTACCCGAATCACGAAAGATTTTGAATGTGGTAAATGTTCTTATAAATGCAAGAGAAATGTTGATTTGAAAGCGCACATGAAGAAACATGCTTCCTCTGGTGGCAGGAGCTGGTTCCGATGTACGCATTGTTCATATAAAACCACACATGAGAATtatttgaagaagcacatgcTGGAACATCCTGCCAGCGAAGATGCTTCCCATAAAGAGATCGAATGGTTCAAATGTGCAAAATGTTCGTATAAAGCCAAACAAAAAGTTCATTTGAGATCGCACATGTTCAGACATGCTCGTAGTGAAGACATCCATTGGTTCAAATGTGCAAAATGTTCGTATAAAGCCAAACAAAAAGTTCATTTGAAATCGCACATGTTGATACATGCTCGTagtgaagacatcgattggttttaTTGTCGCAAGTGTTCATTTAGAACCAGATACAGATATGGTATGAAATCACACATGTTACAGCATGTTGCAGCTGAAGATATTAATTGGTTTCGATGTACGAGCTGTCAGTACAAGAGCAAGCACAAGAATGGTTTGAAATTGCACATGGTCATACACGTTTCTTCCGAGGACGCCGATTGGCTTCACTGTGCGAGTTGTTCATATAAGACTAGGCGCAAGTATAGTTTGAAATTGCACATGTTGAATAAACATGTTCATTCCAGCGAAAACATTGCTTGGTTTCATTGTCCGGAGTGTTCATATAAAACCAAACTGAGAAGTAATCTGAAAATACATATGTTGCAACATGCCACTGCTGAAGACATCAACTGGCTTCGATGTGCAAGCTGCTCGTACAAGACTAGGCACGAGTGTAATTTGAAAcatcacatgttgaaacatgttcCCACTGAAGACGTCGATTGGTGTCGGTGTCCGAAGTGTTCATATAAAACCACAAGGGAGTGCaatttgaagaggcacatgttgagacatgccGCCGCTgcagacatcgattggtttcaaTGTGGAAACTGTTCATTCAAGAGTAAACTCAAGTgtaatttgaaaaagcacatgttgcaacatgctgtCGCTGCAGACATCGAGTGGTTTCGATGTGCAAATTGTTCGTATAAAAGCAAACTCAAGGGTGGTTTAAAGTCGCACATCTTGCAGCAtactgccgctgaagacatcgaatGGTTCCagtgtgctgagtgttcgtacaAAACCAAAAAGAAATATCAGTTGAAATGCCACGCGTTGAAACATGCTGTCGCTGAAAAAATCGTTTGGCTGCAATGTGCGAAATGTTCGTATAAATCCAAACGCAAGGCCActttgaagaagcacatgttgacacatttTACCGCCGAAGACATCGAATGGTTCCaatgtgcggagtgttcgtataaagGCAAACGCAAAAGCGATTTGAAGCAGCACATGTTGACacaacatgctgccgctgaacaCATCCAGTGGTTCCAATGTGCAAATTGCTCGTTCAAATCCAAACTGAAGGCTCAACTGAAGATGCACATGTTGGTACATGCTTCTagtgaagacatcgattggttccagtgcTCAGAGTGTTCATCAAAGTTCAAACGGAAAGTGcacttgaaaaggcacatggtCAAACATGCTGCCGGTAAAGACGTCCATTGGTTCAACTGTGCGAAGTGTTCGTTCAACTCGAGATGGAAAGAGTGCTTGCGAAGACACATGAAAGATATTCATCAAAAGTGA
- Protein Sequence
- MEETHRCAQCPYKFGMKFQLEHHIQRTHRNVYAAELFHAIVEPQQLTCTCCSFKGYYNWDLYEHCKHKHHGRIDDNMERSEEPSSFCNKVSDNYPCNYCQHKSDSGLSHVKHVCKMTQRLTINLARLPVNTAINASVVEPQMTQRLTVNLTRLPLGLPVNVVSNDIVVEPQMTQRPSVNLARLPVNPATNDIVEPQMTQRLTVNLATLPVNLMTNDIVVEPQMTQRLTVNLTRLPLGLPVNVASNDIVVEPQMTQRLSVNLARLPVNPATNDIVEPQMTQRLTINLARLPINLATNDSVVEPPVHTGGRIRRSNAITRITKDFECGKCSYKCKRNVDLKAHMKKHASSGGRSWFRCTHCSYKTTHENYLKKHMLEHPASEDASHKEIEWFKCAKCSYKAKQKVHLRSHMFRHARSEDIHWFKCAKCSYKAKQKVHLKSHMLIHARSEDIDWFYCRKCSFRTRYRYGMKSHMLQHVAAEDINWFRCTSCQYKSKHKNGLKLHMVIHVSSEDADWLHCASCSYKTRRKYSLKLHMLNKHVHSSENIAWFHCPECSYKTKLRSNLKIHMLQHATAEDINWLRCASCSYKTRHECNLKHHMLKHVPTEDVDWCRCPKCSYKTTRECNLKRHMLRHAAAADIDWFQCGNCSFKSKLKCNLKKHMLQHAVAADIEWFRCANCSYKSKLKGGLKSHILQHTAAEDIEWFQCAECSYKTKKKYQLKCHALKHAVAEKIVWLQCAKCSYKSKRKATLKKHMLTHFTAEDIEWFQCAECSYKGKRKSDLKQHMLTQHAAAEHIQWFQCANCSFKSKLKAQLKMHMLVHASSEDIDWFQCSECSSKFKRKVHLKRHMVKHAAGKDVHWFNCAKCSFNSRWKECLRRHMKDIHQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -