Amac023621.1
Basic Information
- Insect
- Anaspis maculata
- Gene Symbol
- -
- Assembly
- GCA_949128115.1
- Location
- OX421964.1:82307893-82310394[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 6.1 3.3e+02 3.3 2.1 1 23 147 170 147 170 0.89 2 21 0.13 7.4 8.5 7.4 1 23 179 201 179 201 0.98 3 21 0.0015 0.083 14.6 1.3 3 23 212 233 210 233 0.96 4 21 0.0035 0.19 13.5 3.5 1 23 242 264 242 264 0.97 5 21 0.037 2.1 10.2 9.0 2 23 274 295 274 295 0.98 6 21 0.39 22 7.0 0.8 1 23 304 327 304 327 0.91 7 21 0.0044 0.24 13.1 2.9 1 23 336 358 336 358 0.96 8 21 0.0019 0.11 14.3 5.1 1 23 367 389 367 389 0.98 9 21 7.8 4.3e+02 2.9 4.6 1 23 398 421 398 421 0.92 10 21 0.02 1.1 11.1 6.2 1 23 430 453 430 454 0.96 11 21 0.11 6.1 8.7 6.0 1 23 466 488 466 488 0.98 12 21 0.023 1.3 10.9 1.0 1 23 497 519 497 519 0.97 13 21 0.025 1.4 10.7 1.5 1 23 528 551 528 551 0.92 14 21 0.002 0.11 14.2 0.5 1 23 560 583 560 583 0.97 15 21 0.037 2 10.2 4.3 1 23 592 614 592 614 0.96 16 21 0.00011 0.0063 18.1 2.5 2 23 624 645 623 645 0.97 17 21 0.082 4.5 9.1 2.8 1 23 654 677 654 677 0.94 18 21 0.00023 0.012 17.2 1.5 1 23 683 706 683 706 0.97 19 21 0.00036 0.02 16.6 3.2 1 23 715 737 715 737 0.98 20 21 0.00048 0.026 16.2 4.6 1 23 746 768 746 768 0.97 21 21 0.15 8.3 8.3 7.7 1 23 808 830 808 830 0.98
Sequence Information
- Coding Sequence
- ATGGACATTATGCGTCGGTGTTTGGAATGTTCGTACGAGTCCGATTTGACGTTCCAAGTCGACCACCACTTCCAGAGGGTACATGTGAATATTTACGCCGCCGAGTTGTTCCATGCCATTGTAGAACCGGAACAATTTGAATGCATCTGCTGCAGTTTCAAGTGCTACTACAAGTGGGACTTGTATGAACACTGCAAAGTACAACATCACGGCAGGGTCGGAGAAGAGAATTTGGAAGAAAGTTCATTTTGCAATGAAGCAGTCAACAAGTACCGTTGCAGCCATCGCAAATGCCATTTCGGAACTGATTCCAGTTTACTGCTCAATAAGCACAATGATTCGTGTGGATTGGCAACAAGGCTAGAAAACGCCAGGCCACTAGCAGCTACAATTGGACATGGAGCGACACATCTTGACGATTCGATTGAGGCCAAAAGCCACGCATGTTCGCATTGTTCATATAGGAGTAAATACATAGTTGACGTAAAGAGGCACGTAATCGCAAAACATGCGATGGATGAGGAAATTGATTGGTTTTATTGTAAGAAATGTACGTTCAGAAGCAAACACAAAAGAGGCTTGAAATCGCACCAGATGCGGCACGTCCCCAAAGACGAAATCGATTGGATTGCATGCAAGCAGTGTTCATATAAAGCCAAAACGAAAAGTTATTTGAGGAATCACTTGAGGAGAGTTCATGCCAGCAATGCTGATTTAAACTGGTTCATGTGCTACAATTGTTCGTATAAAaccacacaaaaaaataatttgaaaacccACATGTTGCAACACGCAAAGATTGAAGAAATCGAATGGGCCACGTGCAACAAGTGTTCTTTCAGAACAAGACACAagcattatttgaaaaaacacatgttgacGCACGCCGCGAGCGACGAAATCGATTGGTTCTCTTGCACGAACTGTTCGTACAGAGCCAAGGTCAAGGCCGCTCTGAAACAACACTACGTGTTGAAGCATACCGCAGCCGATGAGGTCAGTTGGTTCAAGTGCGACAAATGTTCGTACAAAACCAAAGAGAAAGGCAATTTGACACGGCACAAGATACAACATGTCGATAGTAGTGAGATAGAGTGGTTCGAGTGTAACAATTGTTCGTTCAAAAGCAAGCACAAATCGAACTTGAGAACGCACATGCTGCAACACGCCAAGTACGAAGAAATCGATTGGTACAAGTGCACCAGATGTTTATTCAGAACCAAACGCAGGCGCTGTTTGGATTCGCACATGGTGGCTAAGCACACCAAAAGTGAAGAGATCAAATGGTTCACGTGCAGCAAGTGTCCTCACAGATACAAAAATAAGGGGGATTTAAATTTGCACAATAAACGCCGGCACCACGCCGCCATAGTGAAAGACGAAGAAGCTGTTTGGTTCACGTGCACCGAGTGCTCTTACAGAACCAAACATAAGCAATAcatgaaaaatcatgtgacgaCACACGACATGAGCGAAAACGTCAAATGGTACATGTGCAATAATTGCCCGTTCAGAACCAAGTACAAGTCCAGCTTGGAACCGCACATGTTGCAGCATGCCAAAAGCGAAGATATCGAGTGGTTCAACTGCCTCGAATGCCCGCACAGAGCCAAATCCCAAACTAATCTGAAAAAACACGTGCTGGCTAAGCACACCAGCAGCGATCAAATCGACTGGTTTCGGTGTCCCGAATGTCCGTTCAAAGCCAAAGTCAAAAATCTCTTGAAAAGACACATCCTGATGCGACACGCCTCGAGCGACAAACTGCAGTGGTTCGCGTGCACCACGTGCGCCTTCACGACCAAACACCAGTTCAgcctgaaaaagcacatgcTGCAGCACGGCCCCGACGACCAGACCGACTGGATAACGTGCGACAAGTGTTCGTACCGGACCAAAGAGAAAGGCAACCTGAAACGGCACATGCGGAAGCACGCCACCGGCACAGAAATCGAGTGGCACGCGTGCGAAACGTGCTCGTTCCAGACCAAGAACAAGGACAGTCTGAAACAACACGTCAAGCAGCTGCACGGCGACAACGTCTGGTTCCCGTGCGAAAAGTGCCCCTTTCGCTCCAGAAATCGCTCCAATCTCAAGACGCACATCCTACGGCGGCACACCACCAGCGACGAAATCGACTGGTTCACTTGCGACAAATGCCCGTACAGATGCGTCGACAATTACGGTTTGAAGATGCACATGAAGAAGCACGCCGTCGGCGCGGAAATCGAAAGTTTCTCGTGCGACAAGTGCCCGTACAAGACCAAGCACAAGAGCTCCTTGAAGACGCACATGTTGCAGCACGCTTCCGACAGCGAGATCAACTGGGTGCGGTGCTCCAAGTGTTCGTACAAGGGCAAGTGCAAGGCGAGTTTGAAGCTGCACATGGTGCAGCACGCCGCGGCGGACGAGATCGTCTGGTATCATTGTGACGAGTGTTCGTTCAAGACGAAGTACAAGACCCACGTGAAGAGGCACATGCTGCGCCATGCTTCCAGCTAA
- Protein Sequence
- MDIMRRCLECSYESDLTFQVDHHFQRVHVNIYAAELFHAIVEPEQFECICCSFKCYYKWDLYEHCKVQHHGRVGEENLEESSFCNEAVNKYRCSHRKCHFGTDSSLLLNKHNDSCGLATRLENARPLAATIGHGATHLDDSIEAKSHACSHCSYRSKYIVDVKRHVIAKHAMDEEIDWFYCKKCTFRSKHKRGLKSHQMRHVPKDEIDWIACKQCSYKAKTKSYLRNHLRRVHASNADLNWFMCYNCSYKTTQKNNLKTHMLQHAKIEEIEWATCNKCSFRTRHKHYLKKHMLTHAASDEIDWFSCTNCSYRAKVKAALKQHYVLKHTAADEVSWFKCDKCSYKTKEKGNLTRHKIQHVDSSEIEWFECNNCSFKSKHKSNLRTHMLQHAKYEEIDWYKCTRCLFRTKRRRCLDSHMVAKHTKSEEIKWFTCSKCPHRYKNKGDLNLHNKRRHHAAIVKDEEAVWFTCTECSYRTKHKQYMKNHVTTHDMSENVKWYMCNNCPFRTKYKSSLEPHMLQHAKSEDIEWFNCLECPHRAKSQTNLKKHVLAKHTSSDQIDWFRCPECPFKAKVKNLLKRHILMRHASSDKLQWFACTTCAFTTKHQFSLKKHMLQHGPDDQTDWITCDKCSYRTKEKGNLKRHMRKHATGTEIEWHACETCSFQTKNKDSLKQHVKQLHGDNVWFPCEKCPFRSRNRSNLKTHILRRHTTSDEIDWFTCDKCPYRCVDNYGLKMHMKKHAVGAEIESFSCDKCPYKTKHKSSLKTHMLQHASDSEINWVRCSKCSYKGKCKASLKLHMVQHAAADEIVWYHCDECSFKTKYKTHVKRHMLRHASS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00078924;
- 90% Identity
- iTF_00078955; iTF_00078924;
- 80% Identity
- -