Amac023614.1
Basic Information
- Insect
- Anaspis maculata
- Gene Symbol
- -
- Assembly
- GCA_949128115.1
- Location
- OX421964.1:82184616-82186931[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.26 14 7.6 5.6 1 23 179 201 179 201 0.97 2 19 0.0084 0.46 12.3 1.8 1 23 210 232 210 232 0.97 3 19 0.0025 0.14 13.9 1.6 1 23 241 263 241 263 0.98 4 19 0.072 4 9.3 0.6 2 23 273 294 272 294 0.97 5 19 0.019 1 11.1 3.9 1 23 303 325 303 325 0.97 6 19 0.02 1.1 11.1 0.7 2 23 335 357 334 357 0.94 7 19 0.00041 0.023 16.4 2.3 1 23 366 388 366 388 0.98 8 19 0.013 0.73 11.6 5.5 1 23 397 420 397 420 0.97 9 19 0.0011 0.059 15.1 3.0 1 23 429 451 429 452 0.96 10 19 0.0073 0.4 12.4 2.7 1 23 464 486 464 486 0.99 11 19 0.0012 0.068 14.9 3.1 1 23 495 517 495 517 0.97 12 19 0.19 11 8.0 1.5 1 23 526 549 526 549 0.92 13 19 2.3e-05 0.0013 20.3 0.4 1 23 558 581 558 581 0.98 14 19 0.011 0.59 11.9 1.1 3 23 595 615 593 615 0.96 15 19 0.0017 0.095 14.4 1.5 1 23 624 646 624 646 0.97 16 19 0.65 36 6.3 5.4 1 23 655 678 655 678 0.94 17 19 0.0012 0.064 15.0 2.9 1 23 685 708 685 708 0.97 18 19 0.00023 0.013 17.2 1.2 1 23 717 739 717 739 0.98 19 19 0.03 1.6 10.5 1.5 1 22 744 765 744 768 0.91
Sequence Information
- Coding Sequence
- ATGAATGTTAAACATCAGTGTTTGATATGTTCGTACGAGTCTGATTTGAAGTTCCAACTCGACCACCACTTCCAAAGGGCACACGTGAATGTTTACGCCGCCGAGTTGTTCCATGCCATTGTAGAACCAGAACAATTCAAATGCAGCTGCTGCAGTTTCAAGTGTTACTACAAGTGGGATCTGCGTCAACACTGCAAAGTACAGCATCACAGCAGGgctgaagaagaaaatttgGAAGAAGGTTCATTTTGCAACGAAGCAGTCAATAAGTACTGTTGCAGTCACTGCAAATGCAAAAACAAAACGGATTCCAGTTTACTGCTTATCAAGCACACTGATTCGTGTGAACTGGTGACGAGGCGAGAAAACTCCAGGTCACAGGCGGGTTCGATTGGATATGAAGCAACGAATCTTGATGATTTGAGTAAGACCAAAAAACACGCATGTTCGCATTGTTTGTATCGAGCCAAAAAAATAGCTGATGTCAAGAGACACATAATCGCAAAACATGCCAAGGatgaagaaattgattggtttTATTGTGAGAAATGTACGTTCAGAACCAAACACAAAGTCAGCTTGAAATTGCACAAGATACGACACGTCCCCAAAGACGAAATCGATTGGTTTGCATGCAAGCAATGTTCATATAAAgccaaaattaaaagtaatttgACAAAACACTTGAAACTTCATGCCAACGATGCTGATTTAAACTGGTTCATGTGCTACAATTGCTCATATAAAACCACACTAAAAGGTAGTTTGAAAGCCCACATGATGACACACgcaacgaatgaagaaatcgaatGGACCACTTGCAGCAAGTGTCCTTTCAAAGCCAGAAATAAGGGTATTTTGAAGGCgcacatgctgacgcacgccATGAGTGACGAAGTCGATTGGTTCTGTTGCGCGAAGTGTTCGTACAGAGCCAAGGCCAAGAGCActctgaaaaggcacatgttgacgcACGCCACAAGTGACGAGATCGATTGGCTCCCTTGCCCGAAGTGTTCGTATAGAGCCAAGGTTAAGAGCACTCTAAAAAACCACTATATGTTGAAGCATGCCGCGGCCGACGAGGTCAATTGGTTCAAGTGTAATGATTGTTCGTTCAAAAGCAAAGAAAAAGGCAacctgaaaaagcacatgttgctACATGTCAAGGACGAAGAAGTCGATTGGTACTCGTGCAACAAATGTTTTTTCAGAACAAAACACAGAGGCTCTTTGAATACGCACATGAAGGTTAAGCACACCACAAGTGAAGACATCACTTGGTTCACGTGCAACAAGTGCCCTTACAGGGTGAAACTGAAATGGAGTTTGAATGTACACATGAAGCGGCACCACGCCCCTGATGTGAAAGACGAACAAATTGTATGGTTCACGTGCACCGAGTGCTCCTACAAAACCAAACTAGAACAATACTTGAAGAATCATATTAAGACACACGACACGAGCAGAAACGTCAAATGGTTCATGTGCTACAATTGCTCGTATAAAACCAAGCAAAAGTCCACCTTGGAACGGCACATGTTGCAGCATGTCAGGAGCGAAGATATTGATTGGTTCAACTGCCTCGAATGCTCACACAGGGCTAAAACCCGTGTCAATCTAAAAACACACGTGCTGGCGAGACACACCAGCAGCGATCAAATCGACTGGTTCCGGTGCCCCGAGTGCCCTTTCAAAACCAAAACGAATGGCAACTTGAAGGCACACATCACGACGCTACACACCCCGAAGAACGAACTGGTCAAACCTCAATTGATCGCGTGCGCCACGTGCGACTTCACAACCATACATCGGTGGAgcctgaaaaagcacatgcTGCAGCACGTCGCCGACGACCAGATCGACTGGTTCGCGTGCGACAAGTGTTCGTTCCGATCCAAAGGGAAAAGCAACCTGAAAAGCCACATGGTAACGCACGCCACCGGCGCAGAAATCGAATGGCACGCGTGTGGAACGTGCTCGTTCCAGACCAAGCACAAGAAAGGTCTGAGAAAGCACATCAAGCAGCAGCACGACTCTGATACCGAATGGTTCCCGTGCGAAAAGTGCCCCTATCGCTCAAAAAATCGGTGTAATCTGAAGTGGCACATCATGCGCCGGCACGCCTCCAGCGACGAAATCGAGTGGTTCACGTGCGACAAATGTCCGTACAGGAGCGTGAACAACACTGGTTTGACGCGGCACATGAAGCAACATGCCATCGAATGGTTCGCGTGCGATAagtgctctttcaaatctcgcAAAAATGTCGCCTTGAAAAGACACATCAGGCTGAAATCGCACAAAAAGAACTGA
- Protein Sequence
- MNVKHQCLICSYESDLKFQLDHHFQRAHVNVYAAELFHAIVEPEQFKCSCCSFKCYYKWDLRQHCKVQHHSRAEEENLEEGSFCNEAVNKYCCSHCKCKNKTDSSLLLIKHTDSCELVTRRENSRSQAGSIGYEATNLDDLSKTKKHACSHCLYRAKKIADVKRHIIAKHAKDEEIDWFYCEKCTFRTKHKVSLKLHKIRHVPKDEIDWFACKQCSYKAKIKSNLTKHLKLHANDADLNWFMCYNCSYKTTLKGSLKAHMMTHATNEEIEWTTCSKCPFKARNKGILKAHMLTHAMSDEVDWFCCAKCSYRAKAKSTLKRHMLTHATSDEIDWLPCPKCSYRAKVKSTLKNHYMLKHAAADEVNWFKCNDCSFKSKEKGNLKKHMLLHVKDEEVDWYSCNKCFFRTKHRGSLNTHMKVKHTTSEDITWFTCNKCPYRVKLKWSLNVHMKRHHAPDVKDEQIVWFTCTECSYKTKLEQYLKNHIKTHDTSRNVKWFMCYNCSYKTKQKSTLERHMLQHVRSEDIDWFNCLECSHRAKTRVNLKTHVLARHTSSDQIDWFRCPECPFKTKTNGNLKAHITTLHTPKNELVKPQLIACATCDFTTIHRWSLKKHMLQHVADDQIDWFACDKCSFRSKGKSNLKSHMVTHATGAEIEWHACGTCSFQTKHKKGLRKHIKQQHDSDTEWFPCEKCPYRSKNRCNLKWHIMRRHASSDEIEWFTCDKCPYRSVNNTGLTRHMKQHAIEWFACDKCSFKSRKNVALKRHIRLKSHKKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -