Amac004223.1
Basic Information
- Insect
- Anaspis maculata
- Gene Symbol
- prdm10
- Assembly
- GCA_949128115.1
- Location
- OX421961.1:71096435-71106813[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0002 0.011 17.4 0.1 2 23 455 476 454 476 0.96 2 12 0.014 0.77 11.6 0.1 1 23 551 573 551 573 0.95 3 12 0.0023 0.12 14.1 0.5 1 23 584 606 584 606 0.96 4 12 3.5e-05 0.0019 19.7 1.3 1 23 619 641 619 641 0.98 5 12 0.0018 0.097 14.4 0.9 2 23 650 671 649 671 0.97 6 12 0.054 3 9.7 0.7 1 20 678 697 678 700 0.91 7 12 0.016 0.9 11.3 2.0 1 23 706 729 706 729 0.95 8 12 0.0005 0.027 16.1 1.9 1 23 734 756 734 756 0.96 9 12 0.0034 0.19 13.5 4.0 1 23 762 785 762 785 0.89 10 12 0.011 0.58 11.9 1.4 1 23 823 846 823 846 0.95 11 12 0.00054 0.03 16.0 3.9 1 23 868 891 868 891 0.97 12 12 0.0038 0.21 13.3 3.8 2 23 931 953 930 953 0.96
Sequence Information
- Coding Sequence
- ATGGACACGATAATTGAGGGGCCCCCAGATGAGGGGGTCCAAGATCTGAACCTGGTGACCACATCGGAATGGTCCACCGAAAACTCGCAAGAAGTGGTCAACAACAACTCCACATATCTCTACATTGCAGTTGAATATGTAAAAAACGAATACAAAGTCGAACCCGCCGCGAATCTGCCCCAGCCGCAGGATCCCACCTTTGACTTTGAACAGCACGTCAGCCCTTTGGATCCAAACATGAGCTCGGTGGCCAGGTACAGCCCCGTTTACAATGAACCGGCTGCCTCTGAATACAACCCGATTGTGATTCATCAATTGGTTCAGCACAATACCACTGGTGAACTGAATTTGAATCAGAACTCGGCCCTAGAGACCATGCCGGTGTTGTGCCAAAGCGACATACGAGAAGTCGTCGAGAATCATTTGCTCCAAATGGTCACTCCCGAAGACAACTCGGATCCCAGTTCGAACCAGGAGCTGCAGCTGATCCCAGAGAATGAACAGGAAGTCGAGCTTCTGATCACCGATCAAGCCACTGGAATCTCGTACAGCGTTCGATCACAGGAATTGTTGATCGAGCGTTGTTTGGAGGATGAACAGTTGCTGAATTCTCTGGCTCCGGATCCGCTGCTGGACGGAGATTTGTTGACATTGGATGAAAATGCCTTGAAAACCGAATTAATGAAAACCGAATTGATGAAAACTGAACTGGCGGATGACATCATGAATTCTGAAGTCGTGAACACGGCTGTCGGAGTTGAGGTTGTCAACAATTACATTTCGAATCTGACTGTTGGCGATTTGAATGCCGTTGTTGGCAATGACGCCAGTCACTTCAAAATGGAAACGAGGAGGAATCGAAACAACGACGTGGAATTCGAAGATCAGCTTTTGTCCCGTGTTTATAGTATAATTGACAAACCGGTTCCATCACGGGCAAGAGCAACCCTACCTGAATCGTATTTAGTCATAAACAAGGTCGATGAAGGTATCGGTATATTTGCCAAAAAAACTATTCCCAAAAGAACCCAATTCGGGCCATTGACAGGAACTCTGGTTGGTCTTGATGAAATGGAAAAGGTCGCATCAAAAGGAGGTGtccaatttttgattgaaaatgaaAGTGGAGTTGTGAACTTTCTTGATGTGTCCGACGAaaATGCGTCAAACTGGATGAGTTTTGTACGGTCGGCCGATGATTATGACGATCAAAATTTACTCGTCAGCCAAGAAGGGAACGACATTTACTTCACCACAACGAAAAATATCGTTCCGAAGCAAGAGCTCAAAATCGGATACAGTCCAGCTTACGCAGAACGTCACAAATTGCCGTGGTTTGAACCGAAAGAAGACAAATCTTGGGTGTGTTTCGAATGCACCGCCAGCTTTGTCACTTCTGAAGAACTGCAGAAACACCTGAACGTACACGACGACGACAAAGACGAGAACACGAAACCTCGCAAAAAGTTTCTGAAAAATATTAAACGGAAATTCGAAAAGCCGAAGAGCAACGCAGATTCACTGAAATGCAACGATTGCGACGAGCTGTTCCTTCAGCCCGGAAAAGTCGCGTTGAGGCAGCACCTCATCGAGAAGCACAGCTTGAACCGGTTTTCTTCGCTCGACGATCACTTTTCGTCTATCACGAGTTACAGCTGTGGAAATTGCAACGCCGTGTTCAACTCTGAAGCATTGTTGAAGATTCACGGTTACTCGCATAATTCTGATACGTCCGACGAGCAGACGAATCACATTTGCCCGGCTTGCCAGAGGAAATTTCCGACGCAGCGGCAGCTGGTCGGCCACATTTCGACGCACGTTCTCTTCAATGCCAAAGTGCCGCATGTTGAGACTTTCAAATGTCCTGTTTGTCACAAGATATTCGCTCTTCGTGAAAGGCTGAGGCGTCACATGTTGGTGCACGGCTCGGATGACTCCAAGCCACTCCAGTGCAAGACGTGCAACAAGAGGTTCTTGAATAATTCTGCTCTGGCCGGCCACTTGAAGACCCACTTTGTCGGCAAGAAAGTGTTTGAATGTCCCATCTGCAAGGAGAGCTTCGATCACGTCCTGAAGCTGAAGCTTCACGTTCCGAAGCACTGCGAAAACAACGTGTACGCCTGCCCGCACTGCTCCAAGATCTTCAAGAAGTACAGCATCATCCGCAAACATATCCGCGCGTTCCACTGCGACCAGAAGCACGCGTGTCCGCACTGCGCCAAAATGTTCCCCACCGTTGACAAATTGAAGATGCACATGCTGCGGCACTCTGATCACAGAGAATTCCTGTGCGCCGACTGCGGCAAGCAGTTCAAGCGCAAGGACAAGCTGAAGGAGCACTGCAAACGGATGCACTCAGAGGAAAGAGAAAACAACGTGCCGCGTCCGCAAAAATCCAACCAGGCGTCGCCGCCGTCGCGAAAGCTGTCGCCGAAGATGGAACCGACCGATTTCCACCGGTTCATATACAAATGCCACACCTGTCTGGTGGGGTTCAAGCGACGCGGCATGCTGGTCAATCACCTGGCGAACCGCCATCCCGACATCAGTCCCGACTCGGTGCCGGAACTGAACCTGCCAATCCTGCAGACGACGAGAGATTACTACTGCCAGCACTGCGACAAAGTCTACAAGAGCAGCTCGAAACGGAAGGcgcacattttgaaaaaccatccGGGGGCCGCGCTGCCCATGAGCAACAGGAAGCAGGGCTCgtacgcgccggacggatctgGCCTGCCGAATCCGACGTTTTCGCAGACCGTGGGCAGCATCACGACCAGGCCGCAGAGCTGCAAGTGGTGTCACAAGCAGTACGCCAGCAAAGCCAAACTCCTGCAGCACCAGAGAAAGAAGCACAGTGAAGAGCTGGCGGAGCAGACCGTTCCCGACGGCGACAAGTTGGTCGATCAGAACGAACCGCGGCCAATTGAGGAGGTCAACGTTGAAGAAGAGGACTCGCCACCAGATGATTTCAAAGAATATAAGGTTACGGAAGCAGACATTCTGAACTCTGCTTTAGAAGATTTTCCCGAAAGAGACGGAGCAGAACAATATTGCCATTTAGTTGCAATCGCAAGCAGCGACAATTTCACCCAAAACACTGAGCTGAACACTCCTAATTCGCACTTGTACCGCTTATTGACAACAACGAGCAGCGGTAAGTCCTGA
- Protein Sequence
- MDTIIEGPPDEGVQDLNLVTTSEWSTENSQEVVNNNSTYLYIAVEYVKNEYKVEPAANLPQPQDPTFDFEQHVSPLDPNMSSVARYSPVYNEPAASEYNPIVIHQLVQHNTTGELNLNQNSALETMPVLCQSDIREVVENHLLQMVTPEDNSDPSSNQELQLIPENEQEVELLITDQATGISYSVRSQELLIERCLEDEQLLNSLAPDPLLDGDLLTLDENALKTELMKTELMKTELADDIMNSEVVNTAVGVEVVNNYISNLTVGDLNAVVGNDASHFKMETRRNRNNDVEFEDQLLSRVYSIIDKPVPSRARATLPESYLVINKVDEGIGIFAKKTIPKRTQFGPLTGTLVGLDEMEKVASKGGVQFLIENESGVVNFLDVSDENASNWMSFVRSADDYDDQNLLVSQEGNDIYFTTTKNIVPKQELKIGYSPAYAERHKLPWFEPKEDKSWVCFECTASFVTSEELQKHLNVHDDDKDENTKPRKKFLKNIKRKFEKPKSNADSLKCNDCDELFLQPGKVALRQHLIEKHSLNRFSSLDDHFSSITSYSCGNCNAVFNSEALLKIHGYSHNSDTSDEQTNHICPACQRKFPTQRQLVGHISTHVLFNAKVPHVETFKCPVCHKIFALRERLRRHMLVHGSDDSKPLQCKTCNKRFLNNSALAGHLKTHFVGKKVFECPICKESFDHVLKLKLHVPKHCENNVYACPHCSKIFKKYSIIRKHIRAFHCDQKHACPHCAKMFPTVDKLKMHMLRHSDHREFLCADCGKQFKRKDKLKEHCKRMHSEERENNVPRPQKSNQASPPSRKLSPKMEPTDFHRFIYKCHTCLVGFKRRGMLVNHLANRHPDISPDSVPELNLPILQTTRDYYCQHCDKVYKSSSKRKAHILKNHPGAALPMSNRKQGSYAPDGSGLPNPTFSQTVGSITTRPQSCKWCHKQYASKAKLLQHQRKKHSEELAEQTVPDGDKLVDQNEPRPIEEVNVEEEDSPPDDFKEYKVTEADILNSALEDFPERDGAEQYCHLVAIASSDNFTQNTELNTPNSHLYRLLTTTSSGKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -