Amac010569.1
Basic Information
- Insect
- Anaspis maculata
- Gene Symbol
- salm
- Assembly
- GCA_949128115.1
- Location
- OX421962.1:55003503-55011027[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 5 2.7e+02 3.5 1.4 1 23 506 529 506 529 0.93 2 14 0.62 34 6.4 1.2 2 23 596 618 595 618 0.87 3 14 0.0086 0.47 12.2 2.3 1 23 626 648 626 648 0.98 4 14 0.00015 0.0082 17.8 1.6 2 23 651 672 650 672 0.97 5 14 0.13 7.1 8.5 3.8 1 23 678 700 678 700 0.98 6 14 1.7e-05 0.00092 20.7 4.0 2 23 707 728 706 729 0.95 7 14 8.5 4.7e+02 2.8 5.1 5 23 742 760 741 760 0.97 8 14 0.00063 0.035 15.8 2.8 2 23 766 788 765 788 0.96 9 14 0.099 5.5 8.9 0.0 2 23 804 824 803 824 0.96 10 14 0.00011 0.0062 18.1 1.7 1 20 830 849 830 852 0.92 11 14 0.00038 0.021 16.5 0.2 1 23 860 882 860 882 0.99 12 14 0.0012 0.064 15.0 4.0 1 23 888 910 888 910 0.98 13 14 1.4e-05 0.00075 21.0 2.0 1 23 916 938 916 938 0.98 14 14 0.0021 0.12 14.1 6.1 1 23 944 966 944 967 0.96
Sequence Information
- Coding Sequence
- ATGGACTCTTCAGATTCAAATAATACGGTATGCCCAGTGTGCACTCTGTACTTGAGGCCCGGCATCACGCTGAAAAACCATTTGAGCCTCCACCCTAAGCAAAAAGTCATTGAGGCACTATGTCGTTTGGCAATAAACgaagaaaaagaagaggacATGGGCGCACAACAGGAGGAGCTGCCTCAACCTCCCCCGGTGAATGCCATCATGAACCAGCCATGGAATGCACCTAATGTACCCAATGTAATGCCCGGCGGTAACCATGTATTCATATACCAACAAAGTATGTCAAGCACGGGACCCGGACCTGGAACCCAACCTGCTGTCCCGAGCTTACCTCAACAGTACATCATACCAACCATCTTGACTCCTCAAATGATAAATTCGCAGTTGATGGGTTCTTCACCGCTGATGAATATGAACATGAGCGGCCCTTCGATGATGCCCTATGTTATCCAGCAGCAGCAGGTGTTCATGTCGAGTGGTCCATGCTTGAATCCAATGCGTCCCATCGAGGCCCCGCCACTGACGTTGCCGCCCGAGATCAGCATCCAAAACGTGAACGAAGAAGAGCCTACCAAAACCGATGAAGTCGACCTTCACGACCATGACCTTGAAAAAATGTATCATGAAGAGCCTCAACCTCAGACCGACAATGTATCGAAAAGCGACGAACCTAAGTCGATGCTACTCGACGTCATGCAAGCTGAGGATGATGAACACGACGAGCCTGACCTCGTCGAAATTCACGAAGTTGAGGACGAGGAGCAGCCCGAATCCATCTTACCTGTTCCTCCGCCCTCGCCCCCTCCATCAACAATAGACcaaggcgaaccaggatctccTACGGGCTCCGATTGGAGCCTCCGGGTGCGTTCCGATTTGAACAAGGCCTGCCAGACTACGCACAATCTATCGCCCCGATCGAATCTCGAAGAAGACTTCATGGATGAAGCGGAAGAAAACTCCAACAAATCTCACGAGCAGGAAGTACAAGCGCAGCCGCAGAACTTCTATGGATTTATGGATAACAACTATGAATTGGTGCCGGAGACCCATCAGAACTTGAACTTCATGGACATGGAGATAGATTTCTCGAACAATCACATAATATCGCAGgtagaaaatttcgaaCATTCTGAGCGCCAAGGCATTTTGATGACAATAGGCGAGATAGCCGCAGTTCCTTCTGTGGATCCTTCTGAGGAGAGCGTTTCGCGTGGCGATCTGAACATACGCGCGGATGAAAGAATGCCACCGCGTGGTGAGCTCTCTGGACAGGAAAGCATAGGCGACACTAACGACATGACATGGAGCCGTGTGCAATACATGGAAGGTAACACTTACAGCGACATGATGTCGCGTGAATGTTGGGGCGAAAATGCCTCTGATAGCTCGGACATAGATGTACCGCCGCTACAGAGCCGCGTTCCCATCTCCTACAGTGACGCCCAAGAAAACAACGAGATCGAAGACACCCCAACCATAGTCAGCTGCTCGGGCCCACCATTAAACTTCAAATGTTCCGCATGTGGTGACGCTTTTGCTTCTCACAAAGATCGAAAAGaacatgaaaaagaaaaacacccGGAGAAAGCGGCCAAGGCGCGGATGATTGGTGCAGAAGTTGGACGCAAGAACATAAAGAAACTCGTAATTAAGCCGAAAGCGCCGAAAACGGCCGACTCTAGTTTCGACTTCAGCAACAAGTTGAAGGTTGAAGGTGATCTAACCGAGAACAAGGATAACATCAAAGCGGAAGCTGATTCACTGCTGTCGTCTAGTACTTGCACGGTTTGCGATCAAAGCTTTGATAGTTTGCGCATTCTGCGTATACATAAACATCAGGTACATAACATTACGCCTGAAACTGGTTTCAAGTGCGAGACATGCAGTGAATACTTTTCGAACGATTACAAATTCACTGATCACTTGAAGGTCCATCCGCTCGAATGCAATCTGTGCGGAAAGCTGTTTTATCGCCGTCAAAACTTGCAGTTGCACACGAAAAGGCACTTGGGCATCAAGCCGCACAAGTGCGAAACGTGCACCAAGGCGTTCCTCACAAAGCAAAAGCTCGATGAACACAGAAACACGCATACCGGCGAAGCGCCAATAAAATGTCCGCTATGCGACGAATCGTTCCGAAGGCATTCCAATTTAGTACAGCACCGCAACAGGCACCATCTGAACGtcaagaagaaggaaaaagactTCATTTGCCACTGCAAGCAAATATTccattcaaagaaaaaaatggcGTGGCATATGGAAACTCACGATAGCAAACCGAAGTCATGTAGCCAGTGCAATGAGAAGTTCATCCACATGTCAAGCCTAACGCGTCACGTCCGACGCGCACACAATAACAGCTTCTTACCCGACGGTCACAAGACCATCGAGAATGTCGAATGCCCCATCTGCAAGGGCGTCTACCTCAAGTCCTCCCTGGAGGTGCACATCCGCGGCCACAGCGGCGTGCGGCCCTTCCAGTGTCAGATATGCAACAAAGACTTTACCACCAAGTGGAACCTAAAGCTGCACAAGTGGACGCACGCTTCTCGAGTGGCCAAACCGTTCAAATGTGATCTTTGCAAGGGCGCTTTCATACGAGAATCTGACTACATAGCCCACATGAATTCTCACAAGAGCGTCCGACCGTACACTTGCAACTATTGCGGTGCCCGCTTCATCAGAAAGTACAACTGCCAGCGTCACGTCAAGGAGCACGAGAATGCCAAGCCGTACGCCTGCAACATTTGTGCCAAGAGTTTCCATCGTTCATACTACTTGAACGACCACATGCGCATCCATAACGGCTTGCGTCCGTTTTCTTGCCACATATGCGGCAAGACGTCTGCCACCAAGTCGAATCACAATAAACACATTCAGATACATCATGCCAGAGAACCGGTGACCACCGAGAACTAA
- Protein Sequence
- MDSSDSNNTVCPVCTLYLRPGITLKNHLSLHPKQKVIEALCRLAINEEKEEDMGAQQEELPQPPPVNAIMNQPWNAPNVPNVMPGGNHVFIYQQSMSSTGPGPGTQPAVPSLPQQYIIPTILTPQMINSQLMGSSPLMNMNMSGPSMMPYVIQQQQVFMSSGPCLNPMRPIEAPPLTLPPEISIQNVNEEEPTKTDEVDLHDHDLEKMYHEEPQPQTDNVSKSDEPKSMLLDVMQAEDDEHDEPDLVEIHEVEDEEQPESILPVPPPSPPPSTIDQGEPGSPTGSDWSLRVRSDLNKACQTTHNLSPRSNLEEDFMDEAEENSNKSHEQEVQAQPQNFYGFMDNNYELVPETHQNLNFMDMEIDFSNNHIISQVENFEHSERQGILMTIGEIAAVPSVDPSEESVSRGDLNIRADERMPPRGELSGQESIGDTNDMTWSRVQYMEGNTYSDMMSRECWGENASDSSDIDVPPLQSRVPISYSDAQENNEIEDTPTIVSCSGPPLNFKCSACGDAFASHKDRKEHEKEKHPEKAAKARMIGAEVGRKNIKKLVIKPKAPKTADSSFDFSNKLKVEGDLTENKDNIKAEADSLLSSSTCTVCDQSFDSLRILRIHKHQVHNITPETGFKCETCSEYFSNDYKFTDHLKVHPLECNLCGKLFYRRQNLQLHTKRHLGIKPHKCETCTKAFLTKQKLDEHRNTHTGEAPIKCPLCDESFRRHSNLVQHRNRHHLNVKKKEKDFICHCKQIFHSKKKMAWHMETHDSKPKSCSQCNEKFIHMSSLTRHVRRAHNNSFLPDGHKTIENVECPICKGVYLKSSLEVHIRGHSGVRPFQCQICNKDFTTKWNLKLHKWTHASRVAKPFKCDLCKGAFIRESDYIAHMNSHKSVRPYTCNYCGARFIRKYNCQRHVKEHENAKPYACNICAKSFHRSYYLNDHMRIHNGLRPFSCHICGKTSATKSNHNKHIQIHHAREPVTTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -