Amac030046.1
Basic Information
- Insect
- Anaspis maculata
- Gene Symbol
- -
- Assembly
- GCA_949128115.1
- Location
- OX421966.1:12062708-12064726[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 3 1.6e+02 4.2 3.5 1 23 2 25 2 25 0.94 2 17 0.098 5.4 8.9 0.2 1 20 86 105 86 106 0.91 3 17 0.00024 0.013 17.1 4.4 2 23 175 196 174 196 0.97 4 17 0.0014 0.079 14.7 7.3 1 23 205 227 205 227 0.99 5 17 0.0028 0.15 13.8 1.9 1 23 240 262 240 262 0.98 6 17 0.0027 0.15 13.8 3.7 1 23 271 293 271 293 0.98 7 17 0.0041 0.22 13.2 2.8 2 23 311 332 310 332 0.97 8 17 0.00024 0.013 17.1 6.0 1 23 341 363 341 363 0.99 9 17 0.0019 0.1 14.3 1.9 1 23 376 398 376 398 0.98 10 17 0.024 1.3 10.8 5.0 1 23 407 429 407 429 0.98 11 17 8.9e-05 0.0049 18.5 1.3 1 23 453 475 453 475 0.97 12 17 0.035 1.9 10.3 6.9 2 23 485 506 484 506 0.97 13 17 2.5e-05 0.0014 20.2 3.8 1 23 515 537 515 537 0.98 14 17 0.0007 0.038 15.7 6.6 1 23 550 572 550 572 0.98 15 17 0.00065 0.036 15.7 3.9 2 23 582 603 581 603 0.97 16 17 0.076 4.2 9.2 2.8 1 23 612 634 612 634 0.96 17 17 0.0018 0.099 14.4 1.3 1 23 643 665 643 665 0.98
Sequence Information
- Coding Sequence
- ATGCATGACTGTATGCAGTGTTCGTATCAGGCTGCAACGCTCTTTCAACTGAACCATCATATCCAGAGGAAACATGAAAACTTTGATGCAACGCAGCCGTTTCATGTCATGGTTGAACCAGAACACTTCTCATGCATCTACTGTAACTACAAGAGTTACTACATGTTCCAGTTGTACGAACATTACAAACAAGTGCATCATAATCCGGGGACGAAAAGCAATGAAAATGAATCGTTTTGTGAACAGGCCAAGACATATCAGTGTAACTATTGCGGATACAAATCAGATTCCAGCTTAGTTCTCATAAAGCATCGCGTTTTGTGTGAGAAAGCCTCGCCAAGGATGCGACAAGGTGACACAAAAGGATCACCAGATTTCGATGTCCATGATGTGAAAATATCAAGTGATATTGAAGTGTCGAATGTGTCACATTACCCAAGCGAAGAAGTCATCTGGGACATGTTAGAACACGATCCGAGTAAAGCTCGGAGTGAAgcttcaaatgaagaaatcgtatGGATCCAGTGCAAACAATGTTCGTACCGAACAAAACACAAGTCAAATTTGAGAgtacacatgttgaaacatgctgccagCGATGAAATCgaatggtttcagtgcaacttATGTTCGCACCGTACTAAGCACAAGTCAAATGTGAAAAGGCACATGCTAACGCACGTTCCAGACACGGCTTCTGAAACGGAAGTTGATTGGTTTCGGTGCAGCCAGTGTTCCTACCGAGCTAAATACAAGCCGgctttgaaaaagcacatgttgcgacacgctacggatgaagaaatcaactggtttcattgCAACCAGTGTTCGTATCGGGCTAAACGAAAGAGTGGTTTGAAAAtccacatgttgaaacacgttCCGAGTAAAGCTCGGAGTGAAGCCATGAATAACGAAATTGATTGGATCCAGTGCGAACAATGTTCGTACCGAACCAAACACAAGTCAGTTTTGAAagtgcacatgttgaaacatgctgccagCGATGAAATcgaatggttccagtgcagctaTTGTCCGCACCGTGTTAAACACAAGTCGAATATAAAAAGACACATGCTAACACACGTTCCGGACACAGCTTCCGAAACGGAAGTTGATTGGTTTCAGTGCAGCCAGTGTACCTACCGAGCCAAGTACAAGCCGgctttgaaaaagcacatgttgcgACACGCCACAGATGAAGAGGTCAACTGGTTCCATTGCAACCAGTGTTCGTACCGGGCTAAACAAAAGACATACTTGAAAGTGCACATGTCGAAACATGCTGCCGAGCCAACGAAACCAAAACTGAACAGGCAAATGCAGCACAGAACGAACGAAGTAATCACATTTTTTCCATGCAAACTATGCACCTACAGCGCTAAAAGGAAGTCGAATCTGAAAGAGCACATGTTGCAGCATGCAGCaaacgaagaaatcaactgggtccagtgcaaccattgttcgtaccggacGAAACATAAGTCTTACATGAAACAGCACTTGCTGCGACATGTTGCCAGCGACGAAGTCGAATGGTTCCCGTGcagtcattgttcgtaccgtgctaaacaaaagtcgaatttaaaaaggcacatgttgactCACGTTTCGGCCACGGCTCCGGAGAAAGAAACTGATTGtttccagtgcaaccactgttcgtACCGAACCAACCAGAAGActtatttgaaaaagcacatgttgcgGCATGCACCAgacgaagaaatcaactgggtCCAGTGCAACCACTGCTCGTTCCGAAGCAAACGAAATGAAAatctgaaaaagcacatgttgctGCATGCTGCGAACGATGATATCacatggttccagtgcaaccagtgTTCGTTCCGGGCGAAATTTATGTcttatttgaaaaagcacatggtGCAACATGCTGCAGACAAAGAAATCAAGTGGTTCCAGTGTGATgagtgttcgtaccgagctaaacgagaGTCGTATTTGAGAGCGCATAAGTTGAAACATGTTAACAGTGCTGATAATAAGTAA
- Protein Sequence
- MHDCMQCSYQAATLFQLNHHIQRKHENFDATQPFHVMVEPEHFSCIYCNYKSYYMFQLYEHYKQVHHNPGTKSNENESFCEQAKTYQCNYCGYKSDSSLVLIKHRVLCEKASPRMRQGDTKGSPDFDVHDVKISSDIEVSNVSHYPSEEVIWDMLEHDPSKARSEASNEEIVWIQCKQCSYRTKHKSNLRVHMLKHAASDEIEWFQCNLCSHRTKHKSNVKRHMLTHVPDTASETEVDWFRCSQCSYRAKYKPALKKHMLRHATDEEINWFHCNQCSYRAKRKSGLKIHMLKHVPSKARSEAMNNEIDWIQCEQCSYRTKHKSVLKVHMLKHAASDEIEWFQCSYCPHRVKHKSNIKRHMLTHVPDTASETEVDWFQCSQCTYRAKYKPALKKHMLRHATDEEVNWFHCNQCSYRAKQKTYLKVHMSKHAAEPTKPKLNRQMQHRTNEVITFFPCKLCTYSAKRKSNLKEHMLQHAANEEINWVQCNHCSYRTKHKSYMKQHLLRHVASDEVEWFPCSHCSYRAKQKSNLKRHMLTHVSATAPEKETDCFQCNHCSYRTNQKTYLKKHMLRHAPDEEINWVQCNHCSFRSKRNENLKKHMLLHAANDDITWFQCNQCSFRAKFMSYLKKHMVQHAADKEIKWFQCDECSYRAKRESYLRAHKLKHVNSADNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -