Amac008210.1
Basic Information
- Insect
- Anaspis maculata
- Gene Symbol
- -
- Assembly
- GCA_949128115.1
- Location
- OX421962.1:8026644-8028485[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0071 0.39 12.5 5.0 1 23 17 39 17 39 0.98 2 17 0.017 0.92 11.3 4.6 2 23 49 70 48 70 0.96 3 17 0.011 0.63 11.8 2.6 1 23 79 101 79 101 0.97 4 17 0.023 1.3 10.9 2.1 1 23 116 138 116 138 0.97 5 17 0.031 1.7 10.5 3.6 1 23 148 170 148 170 0.98 6 17 2e-05 0.0011 20.5 1.7 1 23 179 201 179 201 0.98 7 17 0.0013 0.073 14.8 2.6 1 23 210 232 210 232 0.98 8 17 0.0035 0.19 13.4 5.0 2 23 242 263 241 263 0.97 9 17 0.0013 0.073 14.8 1.6 1 23 273 295 273 295 0.98 10 17 0.0063 0.35 12.6 2.0 1 23 304 326 304 326 0.98 11 17 0.029 1.6 10.6 0.6 1 23 335 357 335 357 0.98 12 17 0.0038 0.21 13.3 2.2 1 23 366 388 366 388 0.98 13 17 0.00016 0.0091 17.6 2.2 1 23 410 432 410 432 0.97 14 17 0.014 0.75 11.6 0.4 2 23 442 463 441 463 0.97 15 17 0.0016 0.09 14.5 2.6 1 23 472 494 472 494 0.97 16 17 0.0026 0.14 13.9 2.0 1 23 503 525 503 525 0.97 17 17 0.0018 0.1 14.3 5.8 1 23 534 556 534 556 0.97
Sequence Information
- Coding Sequence
- ATGGAAAAGCACAAGTTGAAACATGCCGAAGCTCAAGGAATCCACTGGTTCAATTGCCAGAAGTGTTCTTATCGAGCTAAAGACAGCCGACATTTCAAACGACACATGGCGACTCATGTCGCAGATAACGAAATCGAGTGGTTGAATTGTACCAAGtgctcgtaccgagccaaacataAGACGTATCTCAAAAGGCACTTGCTGACTCACGCCATGAACGAAGCCATAACTTGGTTCAACTGTACCGCGTGTTCTTATCGCACCAATCAAAAAAGCCAATTGAATCAGCACAAGCTGACGCATGTCGCCACGGCTACTCCTGATGCTACAGAAAAAACCAGCTGGTTCGACTGCACCAGGTGTTATTATCGGtccaaacaaaaaaaggaaCTGGACGAGCACATGCTGACGCACGACGATGCTTTGGCGGGAATCGACTATTTCAACTGCACCAGCTGTTCGTACCGCTCCAAAGAAAAACGACTCCTGAAGCTGCACATGCGGAAGCACGCCGCAGACGACGAAGTCGAATGGTTCAGCTGCAACGAATGCTCGTACCGAACGACGCAGCGCGGCAACTTGTCGAGAcacatgctgacgcacgccGCTTCCGACGGCATCAAATGGCACGAATGCACCGAATGCTCTTATCGAGCCAAACAGAAGGACAGCGTCAAGAGgcacatgctgacgcacgccCCGgccgaagaaatcaactggctcAGCTGCACCGAATGCGCTTACCGCTGCAAGCACCAGAAGTCCCTCAAGTGGCACATGCTGACGCACGACGCTCCGTCAGACGAACTGAAATGGTTCAACTGCACCAAGTGCTCGTACCGCGCCAAGCAAAGCGGCAATCTGAAGATGCACCTGCTGACGCACGCCAGCGACGACGAAATCGCCTGGTTCCACTGCACCGAATGCCCGTACAAAGCCAAAGTGGAAATGTACCTGAAACGgcacatgctgacgcacgccGCTCCAGAAGAAGTCAACTGGTTCTACTGCACGGAATGCCCGTACCGAGCCAAAATGGAAATATACGTGAAGCGgcacatgctgacgcacgccGCGCcggaagaaatcaactggttcaatTGCGAAAAATGCTCTTACCGAGCCAAGCTGAGGAAAgaattgaaaaggcacatgctgACGCACGTGGAAGGAATTAAGTCGTTGAGTTCAAGTCAGGCCAGTCGAAAGCCGGAAGAAGTCAAAACGTTCGCTTGCACGGAATGCCCGTATCGATGCTACCAGAACGTCCAGCTGAAGCGGCACATGGTGACGCACCGCAAGCCGGAAGAGATCGACTGGGTGTACTGCACCGTATGCCCTTACCGCGCCAAGCTGAAGCTGTACCTGAACAGgcacatgctgacgcacgcGACGCCGGACGAAATCGCCTGGTTCAGCTGCACCGAGTGCGATTACCGGGCGAAGAAGAAGGCGCACCTGAGGCTGCACATGGTCAAGCACGCCGCCGACGAAGAGGTGACTTGGTTCGACTGCGCCAAGTGCTCGTACCGTTCCAAGCGGATCAACTCGCTGAAGAGgcacatgctgacgcacgcTCCGAGCGAGGAGATCACCTGGCACAGCTGCACCAAGTGCTCGTTTCGCTCGaagcaaaaagaaaatttgaacaaGCACTTGAGGAGTCACGACGCCACGGAGGCGGATGCTCCAAGCGGCGAGAACCAAGCCGTCGAGTGTGCAAGTGCAGTGGCAGAGGAAGCGTCCGTCAAAGTGAAGGTGGAAAAGGACGAAACCGTAGGGTTTGCGCTTTTAAAGAACTCACTGGATGCCATGTGTGAAATATTGACTGATAAAGAATAA
- Protein Sequence
- MEKHKLKHAEAQGIHWFNCQKCSYRAKDSRHFKRHMATHVADNEIEWLNCTKCSYRAKHKTYLKRHLLTHAMNEAITWFNCTACSYRTNQKSQLNQHKLTHVATATPDATEKTSWFDCTRCYYRSKQKKELDEHMLTHDDALAGIDYFNCTSCSYRSKEKRLLKLHMRKHAADDEVEWFSCNECSYRTTQRGNLSRHMLTHAASDGIKWHECTECSYRAKQKDSVKRHMLTHAPAEEINWLSCTECAYRCKHQKSLKWHMLTHDAPSDELKWFNCTKCSYRAKQSGNLKMHLLTHASDDEIAWFHCTECPYKAKVEMYLKRHMLTHAAPEEVNWFYCTECPYRAKMEIYVKRHMLTHAAPEEINWFNCEKCSYRAKLRKELKRHMLTHVEGIKSLSSSQASRKPEEVKTFACTECPYRCYQNVQLKRHMVTHRKPEEIDWVYCTVCPYRAKLKLYLNRHMLTHATPDEIAWFSCTECDYRAKKKAHLRLHMVKHAADEEVTWFDCAKCSYRSKRINSLKRHMLTHAPSEEITWHSCTKCSFRSKQKENLNKHLRSHDATEADAPSGENQAVECASAVAEEASVKVKVEKDETVGFALLKNSLDAMCEILTDKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -