Amac005534.1
Basic Information
- Insect
- Anaspis maculata
- Gene Symbol
- -
- Assembly
- GCA_949128115.1
- Location
- OX421961.1:104168026-104169936[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0002 0.011 17.4 6.0 1 23 41 64 41 64 0.96 2 19 0.001 0.056 15.1 0.4 1 23 73 95 73 95 0.98 3 19 0.087 4.8 9.1 3.3 3 23 106 126 104 126 0.96 4 19 0.00014 0.0076 17.9 2.2 3 23 137 157 135 157 0.94 5 19 0.00059 0.033 15.9 1.1 1 23 166 188 166 188 0.97 6 19 0.00062 0.034 15.8 1.7 1 23 197 219 197 219 0.98 7 19 0.038 2.1 10.2 6.4 1 23 228 250 228 251 0.96 8 19 0.0023 0.13 14.0 1.8 1 23 261 283 261 283 0.97 9 19 0.00043 0.024 16.3 1.2 1 23 292 314 292 314 0.98 10 19 0.0013 0.072 14.8 1.8 3 23 325 345 323 345 0.97 11 19 0.0011 0.063 15.0 2.6 1 23 354 376 354 376 0.98 12 19 0.00078 0.043 15.5 1.0 1 23 385 407 385 407 0.98 13 19 2.6 1.5e+02 4.4 4.1 1 23 416 438 416 438 0.90 14 19 0.0095 0.52 12.1 1.7 2 23 448 469 447 469 0.96 15 19 0.00046 0.025 16.2 3.4 1 23 478 500 478 500 0.98 16 19 0.041 2.3 10.1 1.1 2 23 510 531 509 531 0.96 17 19 0.014 0.78 11.5 3.2 1 23 540 562 540 562 0.97 18 19 9.7 5.4e+02 2.6 4.2 3 23 573 594 571 594 0.93 19 19 0.00013 0.0072 17.9 5.0 1 23 601 623 601 623 0.98
Sequence Information
- Coding Sequence
- ATGATACCTGAAGTTGCAACAGTAGCAGATACTGATCTTCCAGACAATTCAACAATAGAATCTAAAAATGGTATCAAACAGCAAGATTTGATTCATGCCACCATAATGATAGACGACGGTTTTCAATGTGTCCAATGTTCGtacaaattcaaatttaaatcgaaCTTGAAACGACACATGATAAATTGTCACGCTGCTGCTGAAGAAATCAAATGGTTCAGTTGCAATCAATGCCCATACCAAGCCAAACAAAAAGACCCATTGAAGGTTCACATGTTGACGCATGTCCCAGCTGATGGTATCGATTGGGTGAATTGTACCAAATGTTCTTATCGAGCTAAACACAAAAGACTTTTGAACAGTCACATGGTGAAACATGCTGCAGCCGGCGAAATCGACTGGATCAATTGTACTAAGTGTTCTTATCGAGTCAAGCGCAAGAGCAATTTGAAGAGACACATGGTGCAACATGCTGCAACTGCTGATATTCAGTGGTTTAATTGCCCTAAATGCCCTTACCGAGCCAAGCAAAAAGGAACGTTGAAGATACACATGTTTAAACATGCTACCACTGCCGATACCGACTGGTTCAACTGTACCAAATGTTCTTATCGAGGCAAACGCGAAGGACTTCtaaaaaggcacatgttgacacattcCTCGACTGGTGATACCGATTGGTTCACTTGTAGCAAATGTTTTTACCGAACCAAACTACTACGTTACCTGAAAAGACACATGCTAACTCATCATGCTACAGCTGCAGACGACATTGCCTGGTTCGATTGTACGAAGTGTTCTTATCGAGCGAAACAAAAGGGAAGTTTGAAActacacatgttgaaacatgctgcagctgatgaaatcaactggttcaatTGCACAGAGTGTTCGTTTCGAGCTAAGCGCAAAGGCGGTTTGACgaggcacatgttgacacatgctgcgGCTACAGATACCAACTGGTTAGATTGTTCACAATGCTTTTATCGATCCAAACGCAAGGACTCCTTGAAAGAACACATGCTTACTCATGCTGCACCTGAAGATATCCACTGGTTCTATTGTACCGAATGTTCATATCGTTCTAAAGGAAAGAAAGCGTTAAaaagacacatgttgaaacatgccacaGCTGAAGATATTGACTGGTTCAATTGTCCCAAATGTTCCTATCGAGCTAAGCTAAACAATAACTTGAAAGTCCACATGATGACACACGCCGCAGACGATGACATCCATTGGTTCAATTGTATCATGTGCTCGTATCGTGCCAAACAAAAACGCCAGTTGACTAACCACATGTTTCACCATGCCTTGCCCGATGATATCGGCTGGTTGAGTTGTGCCCTGTGTTCTTATCGAGCCAGAGATAAACATCAGTTGAAAAGCCACATGCTGATGCACGCTTCTGCCGACGACGTCGACTGGTTTAGTTGTACCGAATGCTCGTATCGAGCTAAACACAAAGCAAATTTGAAGAAGCACTTGTTAACTCACGCTGCGGCTGACGATATCGACTGGTTGTCCTGTGCCAAATGTTCGTATCGCAGCAAAGAAAAAGGAGATTTGAAAAGACACGAAACGACTCACGCTACAGCTGAAGAAATCGTGTGGTTTAATTGTACCAAGTGTTCTTATCGAGCTAAACACAAAGCCAGCTTGAATCTGCACATGTTGAACCATTCTTCGGTTGAAGAAATAGAGTGGTTCGGCTGCACCAAGTGCACTTATCGGGGCAAATGTAAGAGATATTTAAGAAGGCACATGTTAGAACAACATGGAGAAGAAGTCGAATGGTTCAAATGCACAGAATGTTCTCATCAAAGTAGACGTCAAAGCAacttgaaaagacacatgttacAACATGCTACAATAACTTGCGTAGTTAGCAAGCAGATACCTGTCTAG
- Protein Sequence
- MIPEVATVADTDLPDNSTIESKNGIKQQDLIHATIMIDDGFQCVQCSYKFKFKSNLKRHMINCHAAAEEIKWFSCNQCPYQAKQKDPLKVHMLTHVPADGIDWVNCTKCSYRAKHKRLLNSHMVKHAAAGEIDWINCTKCSYRVKRKSNLKRHMVQHAATADIQWFNCPKCPYRAKQKGTLKIHMFKHATTADTDWFNCTKCSYRGKREGLLKRHMLTHSSTGDTDWFTCSKCFYRTKLLRYLKRHMLTHHATAADDIAWFDCTKCSYRAKQKGSLKLHMLKHAAADEINWFNCTECSFRAKRKGGLTRHMLTHAAATDTNWLDCSQCFYRSKRKDSLKEHMLTHAAPEDIHWFYCTECSYRSKGKKALKRHMLKHATAEDIDWFNCPKCSYRAKLNNNLKVHMMTHAADDDIHWFNCIMCSYRAKQKRQLTNHMFHHALPDDIGWLSCALCSYRARDKHQLKSHMLMHASADDVDWFSCTECSYRAKHKANLKKHLLTHAAADDIDWLSCAKCSYRSKEKGDLKRHETTHATAEEIVWFNCTKCSYRAKHKASLNLHMLNHSSVEEIEWFGCTKCTYRGKCKRYLRRHMLEQHGEEVEWFKCTECSHQSRRQSNLKRHMLQHATITCVVSKQIPV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -