Amac023501.1
Basic Information
- Insect
- Anaspis maculata
- Gene Symbol
- -
- Assembly
- GCA_949128115.1
- Location
- OX421964.1:80184845-80186878[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.0014 0.075 14.7 1.4 1 23 24 46 24 46 0.99 2 21 0.00022 0.012 17.2 1.7 1 23 55 77 55 77 0.97 3 21 0.0018 0.097 14.4 3.2 1 23 86 108 86 108 0.98 4 21 1.9e-05 0.0011 20.5 1.9 1 23 117 139 117 139 0.98 5 21 0.014 0.8 11.5 2.8 1 23 148 170 148 170 0.97 6 21 0.0047 0.26 13.0 1.0 1 23 179 201 179 201 0.97 7 21 0.00022 0.012 17.2 1.2 1 23 210 232 210 232 0.98 8 21 0.00038 0.021 16.5 1.8 1 23 241 263 241 263 0.96 9 21 0.025 1.4 10.8 1.4 1 23 272 294 272 294 0.97 10 21 0.044 2.4 10.0 2.1 1 23 303 325 303 325 0.97 11 21 0.0004 0.022 16.4 2.7 2 23 335 356 334 356 0.96 12 21 0.00018 0.01 17.5 1.7 1 23 365 387 365 387 0.98 13 21 0.0024 0.13 14.0 3.0 1 23 396 418 396 418 0.98 14 21 0.043 2.4 10.0 1.2 1 23 427 449 427 449 0.97 15 21 0.0014 0.076 14.7 0.9 1 23 456 478 456 478 0.97 16 21 0.0036 0.2 13.4 0.9 1 23 487 509 487 509 0.99 17 21 5e-05 0.0027 19.3 6.2 1 23 518 540 518 540 0.97 18 21 0.015 0.85 11.4 0.5 2 23 550 571 549 571 0.96 19 21 0.43 24 6.9 3.2 1 23 579 601 579 601 0.96 20 21 0.0024 0.13 14.0 5.2 1 23 610 632 610 632 0.98 21 21 0.022 1.2 10.9 5.7 1 23 641 663 641 663 0.98
Sequence Information
- Coding Sequence
- ATGGCATCTGACGTTCCAGTGGCGTTTCTTTCAACAACGAAACCCAAGGATTTGCCGCAAGGGGACGGGTTTCAATGTGCCCGATGCCCGTACAAAGCTAAACTTAAATCAACTTTGAGAAAACACATGCTGACTCACGCCAGAGCTGAAGAAATCAAATGGTTCAACTGTACCGAGTGTTCGTATCGCGCCAAGCAGAGGAACAATTTGAAGCGGCACATGCTGATCCATGCCACTGCCGACGAAATCAAGTGGTACTATTGCGCAAAATGTTCTCATCGTTCCAAGCAGAAAGCAACTTTGAAGGCGCACATGCAGATGCACGTTGCAGACAACGACGTCGATTGGTTCACGTGTCCCGAGTGTTCGTTCCGGAGCAGATCCAAGGGCAATTTGAaacggcacatgttgaaacacgccGCAGCCGATGAAGTCGAATGGTTCAACTGTTCCGAGTGTTCGTTCGTCACGAAACATAAACCGAGCTTGACGAAACACGCGCTGAAGCACGCCAAATCCGGAGAAATAACTTGGTTCGACTGCGACAAGTGTTCATATCGGGCGAAGCAGAAAGGCGTTTTGAAACAGCACATGCTGACTCACGCTCCGCCCGACGAAATCAAATGGTACAAATGCACAGAGTGCTTTTATCGAGGCAAGCGTGCAGCGGATTTGAGAAAGCACATGATGCAACACGCCAAACCCGACGACATTGACTGGTTCTCTTGCTCCAAGTGTTCGTATCGCACCAAAACCAACGGCAATTTAAAAAAGCATCTCATTGCCCACGTCAGCGAAGCGGAAGTCGTGTGGTTCAATTGCGTcagttgttcgtttcgaaccAAACGTAAGGAAGGCTTGAAAATACACATGATCAAACACGCGACCGGTGATGACATCACTTGGTTTGATTGTATGAACTGTTCTTATCGAGCCAGGAAGAAGACCACCTTGAAGCTGCACATGTTGACACACGCTAAAGCTGAACAAATGGAATGGCTCAATTGTTCCAAGTGTTCGTTTCAGACGAAACAGAAAGGGAATCTGAAACGgcacatgctgacgcacgcTCCAGAAGCCGAAATCGTCTGGTTCAAATGTGACAAGTGTTCTTATCGCGGCAAGCAAAAATCGGAACTGACGAAACACTTGTTGGTTCACGCTGCAACTGACGAAATCGTTTGGTTCAATTGCACCCATTGTTCGTTCCGTAGCAAACAGAAACCTGGCTTGAAAGCGCACATGCTGACTCACGCCAGCGACGCCGACGTCAGCTGGTTCAATTGCGTTCAGTGTTCGTTTCGAGCCAAGCGCAAGGAAGGTCTGAAGTCGCACATGCTGCAACACGCAACCGTTTTCGACTGGTTCGATTGCACCGAGTGTCCGTACCGCGCCAAGAAAAAAACTCTGCTGAAGCTgcacatgctgacgcacgccGCGCCCGACAACATCGCGTGGTTCCAGTGCACGCAGTGTGCGTACCGCGGCAAAAGGAAAGGCGACGTCAGGAACcacatgctgacgcacgccGCGAGCGGAGAAATAACCTGGCACAGTTGCACGAAGTGTTCGTTACGCTTCAAGCGAAAGGGCCATTTGAAAGCgcacatgctgacgcacgcTTCGCCCGACGAAATCGAATGGTTGAAGTGCGGCGAGTGTTTTTATCGGGGCAAGCGGCCGGGGGACATGCGGAAGCACATGGTGAAGCATGCCACCGCGGAAGTCGAGTGGTTCAGTTGTTTGAAGTGTTCGTACCGGGCCAAGCGAAGGGGGTGCTTGGACAGGCACATGGTGCAGCACGCAGCGGCCGATGAAATAGACTGGTTCGAGTGCAAGGAATGTTCGTATCGCGGCAAGCACAAGAGCAATTTCTTGAAACACATGACGAGGCATGTCGCAGACGACGAAGCCGTGTGGTTCCACTGCGACAGGTGTTCGTATGCCACCAAACATAAACAAGACTTGAAAAGGCACGTGTTGACTCACCGTAGTAAAAGTACCATACCTGTGATGGTCGAAAACACCACGTAA
- Protein Sequence
- MASDVPVAFLSTTKPKDLPQGDGFQCARCPYKAKLKSTLRKHMLTHARAEEIKWFNCTECSYRAKQRNNLKRHMLIHATADEIKWYYCAKCSHRSKQKATLKAHMQMHVADNDVDWFTCPECSFRSRSKGNLKRHMLKHAAADEVEWFNCSECSFVTKHKPSLTKHALKHAKSGEITWFDCDKCSYRAKQKGVLKQHMLTHAPPDEIKWYKCTECFYRGKRAADLRKHMMQHAKPDDIDWFSCSKCSYRTKTNGNLKKHLIAHVSEAEVVWFNCVSCSFRTKRKEGLKIHMIKHATGDDITWFDCMNCSYRARKKTTLKLHMLTHAKAEQMEWLNCSKCSFQTKQKGNLKRHMLTHAPEAEIVWFKCDKCSYRGKQKSELTKHLLVHAATDEIVWFNCTHCSFRSKQKPGLKAHMLTHASDADVSWFNCVQCSFRAKRKEGLKSHMLQHATVFDWFDCTECPYRAKKKTLLKLHMLTHAAPDNIAWFQCTQCAYRGKRKGDVRNHMLTHAASGEITWHSCTKCSLRFKRKGHLKAHMLTHASPDEIEWLKCGECFYRGKRPGDMRKHMVKHATAEVEWFSCLKCSYRAKRRGCLDRHMVQHAAADEIDWFECKECSYRGKHKSNFLKHMTRHVADDEAVWFHCDRCSYATKHKQDLKRHVLTHRSKSTIPVMVENTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -