Ainn007175.1
Basic Information
- Insect
- Anarsia innoxiella
- Gene Symbol
- -
- Assembly
- GCA_947563765.1
- Location
- OX387414.1:2836473-2844684[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.12 8.1 7.5 4.2 1 23 250 272 250 272 0.93 2 12 0.13 8.2 7.5 2.4 1 23 280 303 280 303 0.92 3 12 0.0063 0.4 11.6 2.9 1 23 409 431 409 431 0.99 4 12 0.04 2.6 9.0 3.5 2 23 440 462 439 462 0.96 5 12 0.08 5.2 8.1 3.4 1 23 466 488 466 488 0.98 6 12 0.0013 0.081 13.8 2.0 1 23 493 516 493 516 0.97 7 12 0.11 6.9 7.7 2.7 1 23 520 543 520 543 0.90 8 12 2.7 1.8e+02 3.3 0.2 1 20 562 581 562 583 0.89 9 12 0.85 55 4.9 0.2 2 23 629 651 628 651 0.89 10 12 3.1e-06 0.0002 22.0 1.2 1 23 660 682 660 682 0.98 11 12 0.00068 0.044 14.6 0.8 3 23 690 710 688 710 0.96 12 12 1.3e-05 0.00087 20.0 2.5 1 23 716 739 716 739 0.98
Sequence Information
- Coding Sequence
- ATGTGGGACGTGAAGGCCTGTACGGTGTGCCTCCGTACAGATGGAAAGCTCTATAATATGGACAGCGGGACGTTAAAAATTGAATACTTAAAAATCTCCGGTTTTAAGGCCACAGATATGGCAGGATTACCCCAATACTTATGTGTCGAGTGTTCAGCCTACGTAAAACGCTTCAACAAGTTTAGAGAAAAATGTAAAAGAGCCTATTTTACATTAAAAGAGCTATTGAAAAGTAATAATCAGATAACCAACTTCAATTTAAAAGCCATAAACCGTCAACTTCTAGGCATAATGCCTGATTTATCATATTTAGAGCAGAACAAAACATGCTACGTAACTTCTACATTCAAATGGGAGAAGCATAACCGACTTGGTGCCATTGTAGATGAGTCAATATCTGTTTTTACATGTAGTACAACTGACACAAACGCAGAATTAGTAACACCTAGAGAAACATCTAGATTTGAAGAGCAAGTTAATGTGAAGGAAGAGGTACAGGAGTCGGCAAATGTAAACTATAACGATTCAACAGCTACAAATAATGTAGCAATACAGCCCAGATTCTCTCTGAATGAAGGTTTCAACTTTGAGGACGATTTTGATAACGACAACGATCAAACTTTAGAGCCGTTATCTGTCAAAATCGTGGGAGAAGAGTTAGGAGAGGAATACGCTAACATGACTCCGTTGACATGGAAAGAGGCGAAGGCAGCTGTGGAGATTTGTAAAATGTATTCTGAATGCAAGTATCGTTGTTCGAAATGTAATAAAGGGTTCTCTAGTGACCAGAGATGTAAAGCGCATGAAAGAATGCATAATAAGCACTCCAGTGGTAATTTTCATTGTGAACTGTGTGACTTGTATTATAAGACAGAATTTCTATTAAAAAGCCATGTAACTGAAAAACACATGTACAAGTATGAGTGTAGAAAATGTCCAGAAGTCAACTTTGATAGAATGACAGCGAAACAACATTACTTATGCACACATCTGCAGAAACGTAACAAATCTGGTGTCAATTGGAATGAAGACAGACCAAAATGGCAGAGTAAAAAGGGCGGGAAGCGCGTCAAAGGTGTGGTTACGAACTTACGTGCCATACGGCCGGTGAAAAAAGTTCATAAACTCCCCAATGACTTCCCACTCTATACTCCAGTGAGTCAAGAAGAGCAATATCAAATGGTCCAAGATAGAAAGAAGAGTAGAAACTATTTGGAAGCCATGTATAAATGTGAATTTTGTTATCGTGGGTTCAGAGAGTCTAATACTTATGGGAATCATATGAAGAAACATGATCCGTCACTCTCCGGCAAACTACAATGCGACATGTGCAAAATATACTTCCATACTCAAAGGAAAATGTACAAACATATGAACATAACGCATCTCTTCAAGTACTCCTGTCAAGTTTGCAACTATGTTTGTTATAACAGAGCCCAGGCGCACATACACTACCGGTGGCATAAGAATGTAACATACCCATGTCCACATTGCAAGCAGGAGTTCAAAAAAGCGTCAACACGTCTTACTCACGTGCGAATAAAGCACCCTTCTACCTATATGTGTAATCTATGCGGGCATAGCTTCGTCAGTGAAACTGGACTCTATTGTCATAAACGATTGGCACATACTATGCAGGAGATCGAAACAAGCGAGGCGCACCAACCGGATCCGTCAGATGCGTTCTACTGCGCGGAGTGCGACGTGCATTTCTTATCTGAAGCCGCGTACAAGACGCATCTTGGCAGCTCTAACAAACACGTCGTTACTAATGTATCAACAAAACCGAAGCGGTTCTCGCGTACAGGCGTCGAGCGGAAACCCCGCGGTCGACCGCGATTCACCGCGTCTGATATAGTCAACAACGGGGTCGCTACTTCTACAACATGTGAAGTTTGCAACAAGTTCCTGGCGAACGACGTGCAGGCGCGTAAACATTACGAGGCTGAGCATCCGGGGGCCGAATACCTCAAACGGTATATGTGTGATGTCTGCGGGCATACTACTAGGCAATACGCTAATCTAATGGTGCACATGCGCACTCACACGCAAGAGAAGCCGTACGGTTGTCCGCACTGCGACCGACGGTTCAGTATGCCTAGTAACCGAGACAGGCATCTTGTGGTGCACACAGGTGAAAAACGCTATCAGTGCCAGCATTGTAGCCGACGGTTCACTCAGTCCAGCGCGGTGAAGCTGCACATACAAACAGTACATCTAAAGATACCGTACGCGCCGTGGGATAAGAACAACCGCAAACGGAGGAAGTTACAGGAACTAGAACAAGCGTCGATGTCAGCAAGCTTGGTTCCGCCGGCGCCGGCGCCGATAGTGTCGCAGCACAAGATCATACTGGAACCGCAAGGGGACTACCTTAACGCATACCTCACATAA
- Protein Sequence
- MWDVKACTVCLRTDGKLYNMDSGTLKIEYLKISGFKATDMAGLPQYLCVECSAYVKRFNKFREKCKRAYFTLKELLKSNNQITNFNLKAINRQLLGIMPDLSYLEQNKTCYVTSTFKWEKHNRLGAIVDESISVFTCSTTDTNAELVTPRETSRFEEQVNVKEEVQESANVNYNDSTATNNVAIQPRFSLNEGFNFEDDFDNDNDQTLEPLSVKIVGEELGEEYANMTPLTWKEAKAAVEICKMYSECKYRCSKCNKGFSSDQRCKAHERMHNKHSSGNFHCELCDLYYKTEFLLKSHVTEKHMYKYECRKCPEVNFDRMTAKQHYLCTHLQKRNKSGVNWNEDRPKWQSKKGGKRVKGVVTNLRAIRPVKKVHKLPNDFPLYTPVSQEEQYQMVQDRKKSRNYLEAMYKCEFCYRGFRESNTYGNHMKKHDPSLSGKLQCDMCKIYFHTQRKMYKHMNITHLFKYSCQVCNYVCYNRAQAHIHYRWHKNVTYPCPHCKQEFKKASTRLTHVRIKHPSTYMCNLCGHSFVSETGLYCHKRLAHTMQEIETSEAHQPDPSDAFYCAECDVHFLSEAAYKTHLGSSNKHVVTNVSTKPKRFSRTGVERKPRGRPRFTASDIVNNGVATSTTCEVCNKFLANDVQARKHYEAEHPGAEYLKRYMCDVCGHTTRQYANLMVHMRTHTQEKPYGCPHCDRRFSMPSNRDRHLVVHTGEKRYQCQHCSRRFTQSSAVKLHIQTVHLKIPYAPWDKNNRKRRKLQELEQASMSASLVPPAPAPIVSQHKIILEPQGDYLNAYLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -