Ainn015093.1
Basic Information
- Insect
- Anarsia innoxiella
- Gene Symbol
- -
- Assembly
- GCA_947563765.1
- Location
- OX387418.1:2158319-2160572[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.013 0.82 10.6 4.0 1 23 83 105 83 105 0.98 2 12 0.28 18 6.4 0.3 2 23 128 150 127 150 0.94 3 12 0.29 19 6.3 2.5 2 19 171 188 170 193 0.88 4 12 0.00023 0.015 16.1 1.0 1 23 198 220 198 220 0.96 5 12 0.00013 0.0086 16.8 0.6 1 21 226 246 226 247 0.94 6 12 0.6 39 5.3 2.3 1 21 294 314 294 317 0.86 7 12 0.00063 0.041 14.7 1.4 3 23 420 440 418 441 0.94 8 12 0.001 0.066 14.0 0.4 2 23 447 469 446 469 0.95 9 12 0.00086 0.056 14.3 0.6 1 23 474 497 474 497 0.93 10 12 2.7e-05 0.0017 19.0 3.3 1 23 501 524 501 524 0.97 11 12 0.0013 0.087 13.7 0.4 2 23 531 552 531 552 0.96 12 12 0.0076 0.49 11.3 2.0 1 23 558 580 558 580 0.96
Sequence Information
- Coding Sequence
- ATGCCGAAACACAGCGATAGTCCTCATGAAATTGAACAACTTTCCCCAAGGAACATGGGTGAAAAAAAATTTCGCCTCACCATACAAAATGTCCGATCAGCTAATCGATTAACGATACAGAAGAAACCTTTGCTTTCAGATGAAGAGGCTCGGAAATATGGCGAAATACCAACCAGGAAGGGAAGAAGAAATCTGCAAATACTATTTGAAAACACCACAGTCTTACCTTTTATATGGACTGATAAGTTCTCATGTTTTTACTGTAGTGAACATATAAATGATTACGAAAACTTAAGAAAGCATACGAAGTCGCACAATGTCACGGAATGCAGCCAAGCTCTTAAAGTCGCAAATGATATAAAAATTGACATTTCTGATCTCACATGCGAAAGATGCGAACAGAATTTTCAGAATATTAAAGATATAACTCAACATTTGATATCTGAGCACGATTTAAGGTACGACAGTTCTGTTAACATGGACTTAGAGTGTTACAAGCTCTCTGAACTGAGTTGTGCGATCTGTCACACGAAATATCCGGACTTTACAGATTTGGAAAAGCATTGCAAAGAAGAACATCCGAAAGTTGATCACATTTGCAATAAATGCGATGAAAATTTCTCTAGTAAAGCCGATCTCGATGCTCATTCAACGACTCATGAGAAAGTCAAATGTTTTATATGTCCCGGTTGTCATAAGCCATTTTCTTCAAGAAAGGGTTACAAACTACATATAAGCAAGATTTGTGTTAAAGTTGAACCAAGAATGGAAGTGATAGAAGACGTAGCAAAGAGAACTAATTTAAAACAGCTACGCGAAAGTATTTCTAGCTTCCTTAACATGTCTACTGTAGTGCCTTTCAAATTCTTCATGCAGCGTTTCCGTTGTTTTTACTGCGCTAAAGATTTCACAGACTTTGAACCTATGAGAGCACATTGCATGTCGGAACACCCATTCTGCGACCCTAAAAGCAAACTTATGAAAATGATCAAGGGAAGCAATACAACAGTCAAAATCGACGTAACGTCTCTATCTTGCAAAGTTTGCTGCGAACCTATTAATACAGTCGAAAACATGATAGAGCATTTAGCTTCTAAACATATAGCGAAGTTCGACAAAGCGTTACTAAATGTTTTACAGCCTTACAAACTAGTTAAAGATAATATGTCTTGTTTATTCTGTACAAATGTAACCTTTAGATACTTCTCGAGGCTTCTAGAACACACAAACGAATACCATTCTAAGAATAAGATTATATGTTCGTTTTGCGGCATGACGTTTGGTAAAGAACCGAATTACAGATCGCATTTGCGCCGACATCACAATCCTAATAGCTTAAAATGTAATGATTGCGATTTAGAATTCGATAACGTGTCGAAATTATCCACTCATAGAGCGAAGTTACACGGAGAGAAAGCGTACAAGTGTCCGAAATGCTTAGAAGGTTTCAGCACTCAATATATGCGTCAGAAACATTTGATTGACGTTCACGGGTCTGGACATCCATGTTCTTACTGCGGGAAGCTTTTCACCAGAAATTCCTtcatgaaagaccatataagacgaacgcatttgaaagagaagaacgcagaatgttcggtgtgtaaagagaagttctttgataatatattgttgaggatacatatggtgaagcatgtaggcgagaggaattttcattgcgatgtatgcgggaagacgttcctgtggaagaagaatttaagggggcatatgTCTTCACATAAATAG
- Protein Sequence
- MPKHSDSPHEIEQLSPRNMGEKKFRLTIQNVRSANRLTIQKKPLLSDEEARKYGEIPTRKGRRNLQILFENTTVLPFIWTDKFSCFYCSEHINDYENLRKHTKSHNVTECSQALKVANDIKIDISDLTCERCEQNFQNIKDITQHLISEHDLRYDSSVNMDLECYKLSELSCAICHTKYPDFTDLEKHCKEEHPKVDHICNKCDENFSSKADLDAHSTTHEKVKCFICPGCHKPFSSRKGYKLHISKICVKVEPRMEVIEDVAKRTNLKQLRESISSFLNMSTVVPFKFFMQRFRCFYCAKDFTDFEPMRAHCMSEHPFCDPKSKLMKMIKGSNTTVKIDVTSLSCKVCCEPINTVENMIEHLASKHIAKFDKALLNVLQPYKLVKDNMSCLFCTNVTFRYFSRLLEHTNEYHSKNKIICSFCGMTFGKEPNYRSHLRRHHNPNSLKCNDCDLEFDNVSKLSTHRAKLHGEKAYKCPKCLEGFSTQYMRQKHLIDVHGSGHPCSYCGKLFTRNSFMKDHIRRTHLKEKNAECSVCKEKFFDNILLRIHMVKHVGERNFHCDVCGKTFLWKKNLRGHMSSHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -