Ainn001590.1
Basic Information
- Insect
- Anarsia innoxiella
- Gene Symbol
- -
- Assembly
- GCA_947563765.1
- Location
- OX387401.1:2161771-2168648[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 4.9 3.2e+02 2.4 0.5 3 21 121 139 119 141 0.93 2 18 0.0062 0.4 11.6 0.2 2 23 145 167 144 167 0.96 3 18 0.0078 0.51 11.3 0.2 1 21 424 444 424 445 0.95 4 18 0.0098 0.63 11.0 1.0 2 23 455 476 454 476 0.94 5 18 0.87 56 4.8 1.8 1 23 492 515 492 515 0.93 6 18 1.2 77 4.4 0.1 5 23 527 546 524 546 0.91 7 18 2 1.3e+02 3.7 2.1 3 23 588 612 586 612 0.86 8 18 0.043 2.8 8.9 0.6 2 23 623 645 622 645 0.92 9 18 0.63 41 5.3 0.8 1 23 650 673 650 673 0.87 10 18 1.4e-05 0.0009 19.9 2.0 1 23 679 701 679 701 0.97 11 18 5.4e-06 0.00035 21.2 1.5 1 23 708 730 708 730 0.98 12 18 0.00012 0.0076 17.0 0.9 3 23 737 757 736 757 0.99 13 18 0.00013 0.0083 16.9 2.4 1 23 763 785 763 785 0.99 14 18 1.2e-05 0.00076 20.1 1.0 1 23 791 813 791 813 0.98 15 18 3.2e-05 0.0021 18.8 3.1 2 23 820 841 820 841 0.98 16 18 8.7e-05 0.0057 17.4 0.5 2 23 850 872 849 872 0.97 17 18 0.0035 0.23 12.4 0.1 1 23 877 899 877 899 0.98 18 18 0.12 8 7.5 3.9 1 23 905 928 905 928 0.97
Sequence Information
- Coding Sequence
- ATGGCTTCAGACGAATCAGATGACGAACCCCTAGCGGTTTTAGCTGCGACTAAGAAGTCAACCAGGAAGAATACCGGTAGTATTTTGCCCGACTTGGAAACTAACTATGAACGTCCTATGAAGAGAAAAGTAAAGAATAATCAGCAATTTATGGTAAAAAGGCTACCATTAACGATTAAAATTGGTCGTAAAGTGAAGGATCCGTTATCACACCCGGTCGGCACTCGCCCAGAGGATGTATGGCTTTACCTAAAAGATTTCAATGCAAAAGGTCCTTACAGTTGCTTGTTATGCCCTGAATGGTTTATAGGCAAGGCAAAAGTGCTAGTACATTATATATTAAATCATAAAAAGGATTTTTGTGGGATTTGCAGGTATTTTGTACCAGACAGAACAGCTTGGGAAAAACATATACTGTGTCATACGCCATGGTCCTGCTCACAATGTACTGAAACTTTCCCCACTGAACAAGTTCTAAGGATACATCTTAAAAGCGTACATAACTTGGTTCACTGCCGTCTATGCCACTTTAGAATGCCAGCGGGTGATCAATACCACACACATTTACTGCAAAAACATAATGTTACTTATGTGTTGAATAGAGACGATGAAAGTGTTTGGGAACTAGACTTTGAAAGCGGAGAATCATTTCTCTGTCTCTTATGCTCCAAACCTAACAATCCTGTTACTAATTTCGTTAACCACTTTATGAGCCATCATCATTTCACAATAAAATGTTTCTCCACTTTAATTTCTGGCAAAGATTTACCGTTTACTGTGAAAGGAGCTGATCTTAGCCCTGAATTTATTGAAACCTTAAAAGGCCAGGAGAAATGTGGGTATGGAAATTGGAAACAAAAAGATGCTATTGAACAAGAACAAAATAATGCAGATAATGAAAACATTTTAAAAGAACTTTTAGTTGAAATTAAGCACGAAACAGTAAGTGACAATGAAGAAGAAAAGTCAGAAAATGATGAAAATAACAAACAGAATAACGAATTTCTAAAATCATATCAAGGTGAACAAGATTTTGATGTGACTTCTGTGGAATTTATAGCAATAAAACAATTCTATTTTGATTATTTAAGACAATCAATGGCGGAAGTAAATGAGAATTTAGTACCTGATAATTCAAACATAGAGTATGATAGTACGGGAAGTGAGACATCTGAAATTGAATGTTCTTTATGTTCAACAAAACATTCTAACATCCACACATTACAGACACATGTACACAAAATGCACAATCTCAAAATTGAGCCAATATTCTCATGTAGAGTGTGTGCAACAACATTTGAAACTCAAAATGAATTAGAAAACCATACCAAAGAAGAATTAAGCGAGTTTGAGGACCTCTGGATATGTCAATTTTGCGACAAAGAATTTGATAATAGACAGTCTACTCGGCGACATTTGACAGAACATTTTGAGTTGATTGAATACGACAATTGTTTCAGTCCTCATTTAGGATTTAAATGTAAATATTGTCCAACATTGTTTTGGAATGAAACTGATAGAGAGCATCATCAAATAAGAGTCCATTTGGAAAAGAATAGGGAAGAGTTCTATCAATGTGAATGCTCTGAAATATTTAGTGATAAGGTCTGGTTTACTTACCACTACATTTTAGCACATCAAATGGACGACAGCAACTCTACATACTTACTAAAGTGTTGCCACTGTGCTGTAGTGTTGCCAGATGTAGACCAAATGAGAAGCCATTTTGTAAGAAAACATCCTGAATCTAAAAAGATTTATTGCTCTTTAGAAGGCTGTAAATTTAAACCTTTGAGTCATAAGAAGTCATTTCAGTTGCATTTGAGGACCAAGCATTGTGGAATAGTGCGTAAAGACAGGGTATGTCAATGTAGCACTTGTGGGCAGGAATTCCCTTCGGCTAGGGCCCGCAATACCCACGTCACTGTAGTACACGGGGCAGGGAAGTTCAAGTGTAAAATATGCGACGAAATGCTGCATTCTATTGATGAAAGGAAACTCCACTACTTATTAATCCACCCAGGCCACCACCCGTTCTCTTGCACCATCTGCGGCAAGTCATTCCAATACAAATCATCACTATACATCCACAAACGTGACCACGCTCCAAACAAGCAGAGCTTCACTTGTTCTTACTGTCAGAAAGTTTTTGCGAAAAAGGACTCGTTCCGCGAACACATCCAAATCCACGAAGGACCCCGTCACGGATGCTCGTATTGCCCGATGCGATTCGTCCAACGTTCCAATATGTTACGTCACGAGAGACGCCACACCGGAGAACGGCCGTATTCGTGCCCGCACTGCGACCGCAAGTTCGCGGATAAGGGAGCCTGTACTGCGCATGTCCGTACCCACACAAAAGAAGCGTCATACGCGTGCGTATACTGCGGGTCGACTTTCGCCCAGAAATCTAAGTTAACGTACCATATACGTAAGCACACGGGGGAGAACTTAGAAACGTGTACGATATGCTCCAAAATATTTACCAGTGCGTGCTCTTTGAGAGAACATATGAAGACACATCAGGAGAAGAAAGGGGGCGATGTTAGGTGCCCGCTCTGTGATAAATCATACAAAGACGACCGCTACATGCTCCGGCACTTACGCACGGTACACACCGGCGCGACCTTTACCTGCCCTCTGTGTCCTAAGGTGCTGTCGTCGGCAGTCAGCCAGCGGATGCATGTCCTCACTCATAGTCGACTTAATTTGTTTAGATGTAAATGTTGTCCAAAATCGTACGCAGTGAAACGCACAATAATAAAGCATTTACGACGTCGCCACAGTCTAAAACCATCAGAAGTCAACATGAAAGAATTTTACAAGAAACTAGGTCCAAGGGAATGTCAGCTTAACTTACCCGAAGATGTAATGACCAGTATATTTGGACCTCCGCAGAAAATCATCAAGGAAGCAATTTTGGGAGATTTGGTTAATCAATGTTTGAAGGCAGATGAAGGAGATGATAAAAGTGATGAAAAAGAGGATGAAAAGGGAAATGATGATCACACGGATGAAGAAAGTGAAAGAGCAGGTCAAGAGTTAGAGCCAACTGACTTTGTTAGCGTTAAAATTGAACCTGTAGATTATAGTGAATGTGAAACAGGTTGA
- Protein Sequence
- MASDESDDEPLAVLAATKKSTRKNTGSILPDLETNYERPMKRKVKNNQQFMVKRLPLTIKIGRKVKDPLSHPVGTRPEDVWLYLKDFNAKGPYSCLLCPEWFIGKAKVLVHYILNHKKDFCGICRYFVPDRTAWEKHILCHTPWSCSQCTETFPTEQVLRIHLKSVHNLVHCRLCHFRMPAGDQYHTHLLQKHNVTYVLNRDDESVWELDFESGESFLCLLCSKPNNPVTNFVNHFMSHHHFTIKCFSTLISGKDLPFTVKGADLSPEFIETLKGQEKCGYGNWKQKDAIEQEQNNADNENILKELLVEIKHETVSDNEEEKSENDENNKQNNEFLKSYQGEQDFDVTSVEFIAIKQFYFDYLRQSMAEVNENLVPDNSNIEYDSTGSETSEIECSLCSTKHSNIHTLQTHVHKMHNLKIEPIFSCRVCATTFETQNELENHTKEELSEFEDLWICQFCDKEFDNRQSTRRHLTEHFELIEYDNCFSPHLGFKCKYCPTLFWNETDREHHQIRVHLEKNREEFYQCECSEIFSDKVWFTYHYILAHQMDDSNSTYLLKCCHCAVVLPDVDQMRSHFVRKHPESKKIYCSLEGCKFKPLSHKKSFQLHLRTKHCGIVRKDRVCQCSTCGQEFPSARARNTHVTVVHGAGKFKCKICDEMLHSIDERKLHYLLIHPGHHPFSCTICGKSFQYKSSLYIHKRDHAPNKQSFTCSYCQKVFAKKDSFREHIQIHEGPRHGCSYCPMRFVQRSNMLRHERRHTGERPYSCPHCDRKFADKGACTAHVRTHTKEASYACVYCGSTFAQKSKLTYHIRKHTGENLETCTICSKIFTSACSLREHMKTHQEKKGGDVRCPLCDKSYKDDRYMLRHLRTVHTGATFTCPLCPKVLSSAVSQRMHVLTHSRLNLFRCKCCPKSYAVKRTIIKHLRRRHSLKPSEVNMKEFYKKLGPRECQLNLPEDVMTSIFGPPQKIIKEAILGDLVNQCLKADEGDDKSDEKEDEKGNDDHTDEESERAGQELEPTDFVSVKIEPVDYSECETG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -