Ainn009213.1
Basic Information
- Insect
- Anarsia innoxiella
- Gene Symbol
- -
- Assembly
- GCA_947563765.1
- Location
- OX387416.1:1396064-1399416[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00082 0.053 14.3 6.5 1 23 141 164 141 164 0.97 2 19 0.014 0.9 10.5 0.6 1 23 173 196 173 196 0.96 3 19 0.001 0.066 14.1 0.8 3 23 209 230 208 230 0.97 4 19 0.0033 0.21 12.4 1.1 1 23 239 262 239 262 0.95 5 19 0.0011 0.073 13.9 3.1 1 23 273 296 273 297 0.97 6 19 0.00041 0.027 15.3 1.3 2 23 322 344 321 344 0.97 7 19 0.002 0.13 13.1 1.7 2 23 354 376 353 376 0.96 8 19 0.016 1.1 10.3 0.6 2 19 381 398 380 401 0.93 9 19 1.6e-05 0.001 19.7 0.2 2 23 406 428 405 428 0.97 10 19 0.0042 0.27 12.1 1.7 3 23 438 459 437 459 0.96 11 19 0.0016 0.1 13.4 1.3 1 23 464 487 464 487 0.93 12 19 0.00053 0.034 14.9 1.3 2 23 498 520 497 520 0.96 13 19 7.9e-05 0.0051 17.5 1.6 1 23 541 564 541 565 0.96 14 19 2.8 1.8e+02 3.2 0.1 2 23 571 592 570 592 0.88 15 19 0.17 11 7.0 1.2 1 23 598 620 598 620 0.98 16 19 1.8 1.2e+02 3.8 1.7 2 23 627 650 626 650 0.92 17 19 0.081 5.2 8.1 1.2 1 23 657 679 657 679 0.94 18 19 0.029 1.9 9.5 0.1 1 23 686 708 686 708 0.96 19 19 0.77 50 5.0 3.1 1 23 714 737 714 737 0.96
Sequence Information
- Coding Sequence
- ATGTCAGGAGAAATAAAAATCGAGCGTAAAGATCCAACATCTTTTTTACCCGAAGAGCCAATGAGCTATGAAATTAAAAAAAAGAAAAAGAAAAAAAAGAAGAAGCAAGAGGACGATCCGTTTAAGGACATTGAAGAAAAAGTTCTTATTACAGAAAGGATTTCCGTACCTGATGAATTAGGTTTGGATACACAAGTTACTATCAAAGCTGAAAATATTGAAGTTGAACTGGATTTCAATGATTTCACTGACAATGGAGACTTGCTGCTTCAAACGCAAAGCGAGGACAGCCAAGAACCAGAAATCAAAATAGAACCTCAGAACCACGAAGCTGTCATACTTACATTTCAAGATGTCATCAAACATGAACAAGATATTGAATATCCGGAATTACCCCCAGATGCAACCCCCCCAAAAGGCCACACATGCAAAATCTGCCATTTAATATTCAAAAACACAACAACATTGAAAATTCATCAACGTAGAAAACATGAGATCGGTCGACGCAACTTGAAACATATTTGTGACACTTGCGGTATGGCGTACGGCCTTAAAACTAGTTTAGTGATGCATATTAAAAGGAAACACGGACCGAATTCTACAGTTGACAACTCTGAGGTTGCTTGCGAGATATGTTCTCTAGTTTTCAAAGGAAGTACGAGACTAAGAATGCATATGAGGAGAAAGCATAACGCTTTCGCAGATTCGTTTCAGCATGCTTGTGAATATTGTGGCTTGACATATGAAAAAGTTAGTAGTTTAGTTGTTCATAAGAAAAGGAAGCATTCCACGCAAGAGCCAGCTGCGGAACAATGGTACAGCTGTCCATTTTGTCCAAAGATCTTCAATAAAACAGAAACGTATGGACGTCACATGCAAAGAAAACATCATGTGGACGATAAAGGAAAGCCACAAAACTCAGACGAGTTCTTTGCAAGTTTTAGAAATGAAGCCGGAGAGGTGACTTGCAAGCAATGCCCGTTTGTTTTCTCATCTATTAATTTCCTCAAGTTACACATGAGACGTAAGCATAATGCTTTGAAAGAGGATTTTAGATTGAAATGCAGAATTTGCAATCTGTCTTACAACAAAATTGAAAGTTTAAAACGGCATGTTAAAAGAAAACACGATGAAGGGTCTTACTGCAATGTATGTCGTAAACAATTCGCAACAAGGGAGCAGTATATTAACCACTCACATGTCAAAATTATTAAAGAATGTTCACTGTGTGGTGCAATTTTCGTTAACCAAGGCGGGTTAAGAAGGCACTTACGGACTAAACACAAAATCGACGGACAAAAAGTAGTGTTTTGTAAAATTTGCAACGAAGGGTTTTGTGATAAACGTCAATTGAAACCCCATATTTTAAGAGTACATTACAAAGTTACATATACTTGTGAACTGTGCAGGAAGAACTTCCAATCTAGAGAGAGTTATAGAAAACATGTTTTAGATATTCACACAACTTTGAAAACTAAAACGGAGATGCAGGAATGTAAAGATTGTTCAGAAAAGTTTGATGACGAAAAAGAACTTTGTAAACACGTCCAAATGGTTCATACTGACCGTGACACAAAACCAAATATAGTCAAAATCGAAAAGGAAGAAAACGGTCAAGAATTTGTATGCACGAAATGCCCTACTACATTTCAAAGTTGGGACGAATTGAAAGTGCATTTCCAAAAAGCACATCATCATATTGAAACCACTCAATGCCAAGTTTGTGGCGAAATCGTTCCTGAAACGAAAATAAAATTGCATATGAGAAAAGCACATCCGAAGACACAAGTTTTCGAATGCAAGTTTTGTGAATTCAAAGCTGAAAGCCGACTGAGTTTAACCCAGCATTTATTGAGGCACAAAAATGCAAATACTATTAAATGTGATTTCACTGGTTGTAGATATAAGACGTTTTTTGAAAGTGCTATGGAGAAACACAAGCGTAGACATGCAGACTTGGGAGTCAAGTTTCAATGTTCTAAATGTCCATTCCAAACTATGAATAAATATCTTCTGAGATACCATGAGGAAGCTCATGAAACTGGCAAGAAACGGTACGCCTGTGATCAATGTGACTACGCTACAATCCTACCAGCTAACCTAGTACAGCACAAATATAAACATTCAACGGATAAAAAGTTCAAATGTGACTTCTGCCCTTTTGCAACTAAATATAATACTTCGTTGCGTTTCCATGTTAAAAAGAAACACTGTGATTTACCGACTTAA
- Protein Sequence
- MSGEIKIERKDPTSFLPEEPMSYEIKKKKKKKKKKQEDDPFKDIEEKVLITERISVPDELGLDTQVTIKAENIEVELDFNDFTDNGDLLLQTQSEDSQEPEIKIEPQNHEAVILTFQDVIKHEQDIEYPELPPDATPPKGHTCKICHLIFKNTTTLKIHQRRKHEIGRRNLKHICDTCGMAYGLKTSLVMHIKRKHGPNSTVDNSEVACEICSLVFKGSTRLRMHMRRKHNAFADSFQHACEYCGLTYEKVSSLVVHKKRKHSTQEPAAEQWYSCPFCPKIFNKTETYGRHMQRKHHVDDKGKPQNSDEFFASFRNEAGEVTCKQCPFVFSSINFLKLHMRRKHNALKEDFRLKCRICNLSYNKIESLKRHVKRKHDEGSYCNVCRKQFATREQYINHSHVKIIKECSLCGAIFVNQGGLRRHLRTKHKIDGQKVVFCKICNEGFCDKRQLKPHILRVHYKVTYTCELCRKNFQSRESYRKHVLDIHTTLKTKTEMQECKDCSEKFDDEKELCKHVQMVHTDRDTKPNIVKIEKEENGQEFVCTKCPTTFQSWDELKVHFQKAHHHIETTQCQVCGEIVPETKIKLHMRKAHPKTQVFECKFCEFKAESRLSLTQHLLRHKNANTIKCDFTGCRYKTFFESAMEKHKRRHADLGVKFQCSKCPFQTMNKYLLRYHEEAHETGKKRYACDQCDYATILPANLVQHKYKHSTDKKFKCDFCPFATKYNTSLRFHVKKKHCDLPT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -