Basic Information

Gene Symbol
-
Assembly
GCA_947563765.1
Location
OX387395.1:9420796-9428057[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 27 0.00011 0.0071 17.1 1.8 1 21 199 219 199 220 0.96
2 27 0.00097 0.063 14.1 2.4 2 21 253 272 252 273 0.93
3 27 2.8e-06 0.00018 22.1 0.2 3 23 308 329 306 329 0.96
4 27 0.0079 0.51 11.3 4.2 1 23 377 400 377 400 0.97
5 27 0.18 12 7.0 0.1 1 23 413 435 413 435 0.95
6 27 4.8e-05 0.0031 18.2 1.4 1 23 475 498 475 498 0.97
7 27 0.00058 0.038 14.8 3.8 2 23 532 554 531 554 0.97
8 27 0.00023 0.015 16.1 1.0 1 23 604 627 604 627 0.97
9 27 9.8e-05 0.0063 17.3 1.9 1 23 683 705 683 705 0.97
10 27 0.0034 0.22 12.4 4.4 2 23 717 738 716 738 0.97
11 27 0.0051 0.33 11.8 0.7 2 23 750 771 749 771 0.96
12 27 0.003 0.2 12.6 1.1 1 23 781 803 781 803 0.98
13 27 0.062 4 8.4 3.9 1 23 829 851 829 851 0.95
14 27 0.00026 0.017 15.9 1.0 1 23 862 884 862 884 0.98
15 27 7.8e-05 0.005 17.6 0.4 1 23 892 914 892 914 0.98
16 27 0.0005 0.033 15.0 0.4 2 23 934 956 933 956 0.97
17 27 0.16 10 7.1 1.2 1 23 974 996 974 996 0.93
18 27 0.0046 0.3 12.0 3.8 2 23 1037 1059 1036 1059 0.94
19 27 0.00052 0.033 15.0 0.3 1 23 1080 1102 1080 1102 0.97
20 27 0.062 4 8.4 0.3 3 23 1184 1204 1183 1204 0.96
21 27 2.6 1.7e+02 3.3 0.5 5 23 1214 1232 1211 1232 0.93
22 27 0.018 1.2 10.1 0.8 2 23 1243 1265 1242 1265 0.94
23 27 1.2 78 4.4 6.1 2 23 1282 1300 1282 1300 0.90
24 27 0.15 10 7.2 1.0 2 21 1304 1323 1304 1324 0.93
25 27 0.079 5.1 8.1 0.5 2 23 1373 1394 1372 1394 0.94
26 27 0.014 0.92 10.5 0.4 2 23 1405 1427 1404 1427 0.95
27 27 3.5 2.3e+02 2.9 1.8 2 20 1465 1483 1464 1485 0.91

Sequence Information

Coding Sequence
ATGGCCCTTAAACTCGGAAAATGCAGACTTTGTCTGAAGCTGGGCGACTTTTATTCCATCTTCACGATGGACAACAATCTGCATCTCTCGGAAATGGTGATGGAATGCGCTAGAGTAAAGGTGTACGAAGGAGATGGTCTACCTGACAAGATCTGCTCAGAGTGCATTCAGAAACTAAGCAGCGCGTATATCTTCAAGCAACAATGCGAGAGATCTGATATGGAGCTGCGTAGGAACTACGTTCCTCCACCTGGGTTCAGCATAACACCACCACCTCAGAACCGTCAAAGCAGTGACTCTGCATTCTCATCAGCTCACACTGACACCTCTTTTCATCACAAACCTCCTTCCACCGAGGTCACTCCAGCAAACCGTACTAGGAAAAGAAGCAGGGAAAGCAACGACGAATCATTCAGTAGCAGATCCCACGACTACATACCGAGTACCTCGAAAAGAGTGGAAGAATTAAGGAGCACAATAAAAAAACCGCGCCGTCAATCACCTCATATAACCGCTATAGATTCCGATTTCGACGATAACAGCTTCTCACATTTCTCCGGAGAAACAGACTCTGATGAACCGCTAATGCATTCGTTTAAGTGTAAAACCTGCCCAAAAGAATTCAAAACTGCTAACAGTCTGAGATCTCATGTACGACATTGTAGAGATAAACACGATACCTCGTTAGAACAAAACCAACTAGTTCACATTCCGAGAAAGAGTTTGGAAGACGCGAAGGACGCTGATGATAAACTGTCCTGTGATAAATGTCACAAAACATTTAAACTAAAGATAATGTTGAAAAGACATCAGCAAAGTTGCGGGAAATCGCCGCAGATTTCTAAAGAACTACTCATAACTTTAGAACCGATTGATGCAGTTTCACCAGTTAAAGTAACAGATCAATCCAAAAAGATCGATTGCGAAATATGCCCAACGAAATTTAAAACTTACGAGAACTTAGAGAAGCATATGAGAGTGATCCACGCGGCGATACCAAAGAAACCAAAAATTGTTAACGACGAGAAAGTATTAGTACCGTGCGTTTTCTGTGACGAGCCTCAGGAAACTTTCGCTGCTTTTTCGAGCCATTTTACAACTTGTCCTAAGAAAGTCGACGGTCAAATATTCACATGTAGTGTCTGCCAAAAAGTATGCAAGATGAAGCAGAATTTCTTCTCCCACGTGAGGCAGATTCATTTCGCTAAAGAATCGTTGAGAGAGACGCCGAAAACTTTCGACTGTCGGATTTGTACTGCTAAGTTGGAGACTCAAGATCTACTTATTTCGCATTTGGCACAGCATATGTCTAATATTGAGGATACTGATGATATTGCGGATGATGAGTCAAGAGCAAGCACAGCCGACGACGCAGTATCAATGCGTTCAGACTACACCAACTCCACAGTCTCCAATGGCCCATACAAATGCAATATCTGCGATAAAGGCTTCAAGTACAAGAAGGCAATGGAGACACACACCATGGTCAAACACCAAAACCAAACCGTAGAAGTCAAACTGGAACCGCCAGAGAAACCCGTAGAGGAATACAGAGAATTCGATGACGATTCCAGCGAAGGCGAAGACGATCTAACATGTGATATCTGCGAAAAACAATTCTCATACAAACGGTTACTACTACACCACAAAAGAACAAAACATAACATGTCATCTGGGACAAAACGAGCTAAAATAAACTTAAAAGATTGCAGTGTACGTTGTCTCATTTGTGATATAGAAATGAAAGTGTCGAGCATTAATGAGCATAATCAGAAGCATATAGCGGCTAATATGAAGCCGAGGAATCAGTACACTTGTGCGGAATGCTCGGAGAAGTTCAAGAGTTGTAGCGCGTTGGCTACTCATATTAAGTTGATACATCGGTTGAAGCAACAGTCTGAACCGCCGCCGCAGCAGTTTGAAGGTACAAATCTGGCGGATTTTTGTGAAGTCGTTGTGACGAAAGCGGAACCCCTGGACAAGGTCCAGAGTCACAACGGCTTTGAGGAGGTTCCGGTCACGACCGCCCTGGTCGACCTGGGCGGGTTCACGTGTCACCTGTGCGGGAAGACTCTTAAGACCCTCATCTCCTTGAAGCGCCACGTCAATTGGCATAACAACGTCGGGAATAACATACAGAAGAGTATCGAGTGTTTTGTTTGTAAGGAGGTATTCCGCTTCCAATGCCACTACCGCCTCCACATGCGTGTGCACTACAAGGATACGAACCTCGACCCCCAACACCTGACCTGCCCCATCTGCGGCCGCCGCAGCAAGCACCTTCGCGCCGCGCAGGCTCACATGAACTTCCACAAGCAGACCAGGTTCAAGAACAAAGACTACCAATGCTCCATATGCAAGAAAGTCTTCCAGTTCAGAAAGGTATATCTCTCTCACATGGCCATCCATTACAAGCGAGGCGAAGGGCAGAACGCGATTGTTGGTGATCGACCCGTCAACCAAGGTAAGGAAACAGAAGGCGAACATATTTGTCCTCAATGTGGTAAAGTCTGCGAAACGGAGAATTCTCTAAAATGCCACGTCAGATGGCATTCATCAAAATCTTCTCTATTCGGTACCCGATATGAATGTAACATCTGCAATTTACAATTCACAAACAAAAGACGGCTGGAAATCCATACCAGAGATCATTTCGAAGACGAAAACGGACCTTACAAATGTAGTGTTTGTGGGAAAGGTTATATTGATGAGGAATATTTCAGACGGCATGTCAAAGGACACAATTTCGATCATCAAAGTCACAAAAAGCGATTAGAAAAACTCAGGAAGGGTAAAGTTAAATGCCCGATCTGTCCACGGTTCTACCCTGACATGTTACATCTAATTAGGCACATAAAACGATCGCACCCAGAGAGTAAAATGATCAAAGCGGACCCCGACGCTCCTCCGCCACAATACTACAACTGCAAACTGTGTACCAAAGTATTCCTCACAGAACGAAGGCTTAAGAAACACGAAGAAGCGCATTTAAGGAAACACGAGTTCTTTAAATGCAAATTCTGTGGTCTGAAAAGCATTTCTTTACAAAAACATAAACTACACGTGAAACAAAAGCACTTGACTTCCAAATATCTGGATCCTCCATTGAAATGCCCGCATTGTACGGAAACTTTTGTACGAGGTTATATGCTACACCACCATATCAAAGATGTCCACGATATTGATGAAGCGTGGATTGCTGATCGGGCAGAAGAACCCTTAGGACCTCTCAAAGAGTTCCAATGCTCCATCTGCTTAAAGGTCCTCGCGACTAAAGGCAACTACGAAAGGCATATCGACTACCACAATTCCTTACGCTGCAATTACTGCTTTGATTATTTCAGCTCTCTCAAATTCTTGGAAGGCCACTTAGCATTCAGTTGCGATAAGAAAAAACTCATAGGGGATACTGAGACTTACGCAAAGAAAGTCAAATGCCATTTGTGCTACAAAGCGTTCCATTTACAGATCAAATTAGATTGTCATTTGCGAACGCAACACAACATCTTGGTTTCTAAAGAAGCTTCGGCTGGTAAACAGGAAAACCTTTGCGATTTCTGCTTTAAAGTCTTCGAAAATGAATACGCGTTGTCTTTACATAAAATCTATCATCGAACTATTGGTTATTACGGTTGCATCTACTGTGACAAGAAGTTTAACGCGTTAGTTCCTTACAACAAACACAAGAAGCAACATTTGAATAAATTAAATCCAGACAATCCGACGAAATGCGAACATTGTGACGAAACTTTTGTCGCGTTTAGAGACATGATAGAACACATGAAAGATTTGCACGGGGACGATAAAGATTGGATCGTAATGCCTAAAGAATCAGTGGAGGAGAAGTGCCATATATGTAACAAAACATTCTTCAATTTGCACAGACACCTCGCGTACCACGAAGAGAACAGATGCAAGAAATGCGGAGAGTATTTCTATTCGCGAGTGGACTATGATAACCATCTCTGCGCAATTGAAAGTGATGACGACACGCAGGAAGACAATGAGAATGATATCCGACCAAAATACGAAGAATGCTCTTTCTGTTTTAAACCTATAACCCGCAAGAACACAAAAAACAAACACGATAGTCTACATAAAGTATCCGGCGCGATCTCTTGCAGATTCTGCCCGTTGAAATTCAAAACCTTAGACGCATTTAACATCCACGCATTCTCTCACAGAAGCAGGAAATACAATAAGAAACCAATAAAATGCAGAATTTGTAAAGAAAAATTTGTGAAATACGGGCCGTTTATCAAACATATGAAAGGAGTACATAAGTCAACGAAGAAGGTGCATTACAGAGCGGTAGTTAAACCTGAAAGATGCGTCGTTTGCGGCGACAACTTCCCAAATCTGCACAACCACTACCGAAGTCATTTGCAAAACCAATGCCAGCTGTGTTGGAAATACTTCACGTCAGTAAAAGTGTTTAGTCAACATCAATGCGATAAAGAAGACTCAGACCCATCAAAAGTATTCACGAGCGATGAAGACCTACTCACATTAATCAACACTTACGTACCGAAAGATGAAAAGGATGATGAGAAATACTACGGGTACACAGACAATGAAGATGATGAAGAAGAGATTGAAAACCAAAACGACGAGAGCCAAAACTCTTTAGACCCAAATATGTTCGTCCAACCATTTATAATATCCGATGTGCTATCATTATACGAAAGAAAAGAGGAGTTATTGGCAAATTATCAAAAAGAAGACGCGAAGAAGATTGAAATGACTAAAAGTGTGACGAAGAGAGTCCGACATAAAAAGAAAACGGAAAAGATTAAAAAACCTGACACAGATTATTCGGAAAGCGATTGCGAAGTAGTAGTTATATTAGATGGAGAAAATAATGACAAAGAAAAGGAAGTTATAACTATAGATTTGGATGATTGA
Protein Sequence
MALKLGKCRLCLKLGDFYSIFTMDNNLHLSEMVMECARVKVYEGDGLPDKICSECIQKLSSAYIFKQQCERSDMELRRNYVPPPGFSITPPPQNRQSSDSAFSSAHTDTSFHHKPPSTEVTPANRTRKRSRESNDESFSSRSHDYIPSTSKRVEELRSTIKKPRRQSPHITAIDSDFDDNSFSHFSGETDSDEPLMHSFKCKTCPKEFKTANSLRSHVRHCRDKHDTSLEQNQLVHIPRKSLEDAKDADDKLSCDKCHKTFKLKIMLKRHQQSCGKSPQISKELLITLEPIDAVSPVKVTDQSKKIDCEICPTKFKTYENLEKHMRVIHAAIPKKPKIVNDEKVLVPCVFCDEPQETFAAFSSHFTTCPKKVDGQIFTCSVCQKVCKMKQNFFSHVRQIHFAKESLRETPKTFDCRICTAKLETQDLLISHLAQHMSNIEDTDDIADDESRASTADDAVSMRSDYTNSTVSNGPYKCNICDKGFKYKKAMETHTMVKHQNQTVEVKLEPPEKPVEEYREFDDDSSEGEDDLTCDICEKQFSYKRLLLHHKRTKHNMSSGTKRAKINLKDCSVRCLICDIEMKVSSINEHNQKHIAANMKPRNQYTCAECSEKFKSCSALATHIKLIHRLKQQSEPPPQQFEGTNLADFCEVVVTKAEPLDKVQSHNGFEEVPVTTALVDLGGFTCHLCGKTLKTLISLKRHVNWHNNVGNNIQKSIECFVCKEVFRFQCHYRLHMRVHYKDTNLDPQHLTCPICGRRSKHLRAAQAHMNFHKQTRFKNKDYQCSICKKVFQFRKVYLSHMAIHYKRGEGQNAIVGDRPVNQGKETEGEHICPQCGKVCETENSLKCHVRWHSSKSSLFGTRYECNICNLQFTNKRRLEIHTRDHFEDENGPYKCSVCGKGYIDEEYFRRHVKGHNFDHQSHKKRLEKLRKGKVKCPICPRFYPDMLHLIRHIKRSHPESKMIKADPDAPPPQYYNCKLCTKVFLTERRLKKHEEAHLRKHEFFKCKFCGLKSISLQKHKLHVKQKHLTSKYLDPPLKCPHCTETFVRGYMLHHHIKDVHDIDEAWIADRAEEPLGPLKEFQCSICLKVLATKGNYERHIDYHNSLRCNYCFDYFSSLKFLEGHLAFSCDKKKLIGDTETYAKKVKCHLCYKAFHLQIKLDCHLRTQHNILVSKEASAGKQENLCDFCFKVFENEYALSLHKIYHRTIGYYGCIYCDKKFNALVPYNKHKKQHLNKLNPDNPTKCEHCDETFVAFRDMIEHMKDLHGDDKDWIVMPKESVEEKCHICNKTFFNLHRHLAYHEENRCKKCGEYFYSRVDYDNHLCAIESDDDTQEDNENDIRPKYEECSFCFKPITRKNTKNKHDSLHKVSGAISCRFCPLKFKTLDAFNIHAFSHRSRKYNKKPIKCRICKEKFVKYGPFIKHMKGVHKSTKKVHYRAVVKPERCVVCGDNFPNLHNHYRSHLQNQCQLCWKYFTSVKVFSQHQCDKEDSDPSKVFTSDEDLLTLINTYVPKDEKDDEKYYGYTDNEDDEEEIENQNDESQNSLDPNMFVQPFIISDVLSLYERKEELLANYQKEDAKKIEMTKSVTKRVRHKKKTEKIKKPDTDYSESDCEVVVILDGENNDKEKEVITIDLDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-