Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 8.2e-11 7.6e-08 32.3 0.2 2 41 20 59 19 64 0.89

2 2 5.3e-13 4.9e-10 39.3 0.1 1 44 126 169 126 170 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	8.2e-11	7.6e-08	32.3	0.2	2	41	20	59	19	64	0.89
2	2	5.3e-13	4.9e-10	39.3	0.1	1	44	126	169	126	170	0.93

Coding Sequence: ATGAATTATATTATTTTAGATCCACTTCAATGTAACACAGTTCGTCGAATTTGGTCCGAATCAAACATGCAAAAGGCAGTAATCGCAGTCCAAGAAGGACGGTTATCACGACACGCGGCATCAAAGAAATACAAGATTCCAAGAACTACTTTGCGTCATTATCTACAATCTAACACTCTACATAAAAAGAGAATGGGACGGGCTCTTCTTATGAACAAAGATCAAGAAAGAGAATTAATAAAAATCATCAAACGTAACGCAGAACCTGGAGAACGCCTCACTTTAAAACAAATTCGGAGAGAAGCCTTTGTTTACTGTGAACAACATCAAATTAAACATAATTTTCAGTTCGTGAAAACCAAAGAACGCCAGTGGACCGAAACAAACCTAAAGGCAGCTATAAAAGCAGTTCGGCATGACAACATGTCGCAGAAGGCTGCCGCTAAAAAACATGGGATACCAAGAACCACTTTGATAAACTATCTTCATTCAAAAATAGACGTCAAGAAGAAAAAGGGTCCCGCACCTCTAATGACCGAAGAGCAAGAGTGGGAACTGGCAAATTCTATCAAGAATCGTGATACCGATATCACGCTAAAGCAACTTCGTAGAGCTGGCTTCCTTCATTTCGAGAAATATAAGATTTATCATAATTTTAAACGAAGTCAAGATTTGGACCGTCCTGCATTTTTCACGTTGACAACTGGCGCAAAGACTATGAAGTTCCAAGGATATTGTTACACGAGGCACTCTGTTTGCTCGTCCAGGGTAAAGTGGCTTTGTATAGACAGTCGGACCAGGAAATGTCATGCATTGATAACTACTATAGGTAGACGGGTTGTAGATAGACACAACAAACACACTCACCCTCCATATTAA
Protein Sequence: MNYIILDPLQCNTVRRIWSESNMQKAVIAVQEGRLSRHAASKKYKIPRTTLRHYLQSNTLHKKRMGRALLMNKDQERELIKIIKRNAEPGERLTLKQIRREAFVYCEQHQIKHNFQFVKTKERQWTETNLKAAIKAVRHDNMSQKAAAKKHGIPRTTLINYLHSKIDVKKKKGPAPLMTEEQEWELANSIKNRDTDITLKQLRRAGFLHFEKYKIYHNFKRSQDLDRPAFFTLTTGAKTMKFQGYCYTRHSVCSSRVKWLCIDSRTRKCHALITTIGRRVVDRHNKHTHPPY

Sequence clustering based on sequence similarity using MMseqs2