Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 2.4e-09 2.2e-06 27.6 0.6 3 41 20 58 18 71 0.92

2 3 1.3e-14 1.2e-11 44.4 0.1 4 33 142 171 139 179 0.92

3 3 4.9e-14 4.5e-11 42.6 0.1 4 36 195 228 192 236 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	2.4e-09	2.2e-06	27.6	0.6	3	41	20	58	18	71	0.92
2	3	1.3e-14	1.2e-11	44.4	0.1	4	33	142	171	139	179	0.92
3	3	4.9e-14	4.5e-11	42.6	0.1	4	36	195	228	192	236	0.89

Coding Sequence: ATGAAAAATATATTTTTAGATCCATTGCATTGCAACACAGTTCGTACTTGGTCCGAATCAACCTTGCAAAAGGCAGTGAGAGCAGTTAAAGAAGGACGGTTATCAGGACGCGCCGCATCCGAGAAATACAGGATTTCAAAGACTACTTTGCGTAAATATCTACAATCCAACACGCTACATAAAAAGAAAAGAGGACGGGCCTATCTTATGAACGAAGACCAAGAAAGAGAATTAATTAAAATCATCAAACGTAACGCAGAACCTGGAGAACGCCTCACTTTAAAACAAATTCGGAGAGAAGCCTTTGTTTACTGTGAACAACATCAAATTAAACATAATTTTCAGCACAAATTGGTTCAGCAGAATTATGAACTGATGTGTGAAGCGTGGAGATTTCGCAGGAAGGGCGCCTGGTCTCAAGCTAGTTTGCAAGCAGCTGTCGACGCAGTCAGACTAGGAGCAATGTCAATTCAACGCGCTTCTAAAAAATACGGAATCCCAAAATCTACTTTAATTCAGCAGAATTATGAACTGATGTGTGAAGCGTGGAGATTTCGCAGGAAGGGCGCCTGGTCTCAAGCTAGTTTGCAAGCAGCTGTCGACGCAGTCAGACTAGGAGCAATGTCAATACTACGCGCTTCTAAGAAATACGGAATCCCAAAATCTACTTTAAGTGACAATTTAAAAGCAAAAATAGTGATCAAAAAGAAAATGGGACGACCAAGAAAAGGAATTGATTGA
Protein Sequence: MKNIFLDPLHCNTVRTWSESTLQKAVRAVKEGRLSGRAASEKYRISKTTLRKYLQSNTLHKKKRGRAYLMNEDQERELIKIIKRNAEPGERLTLKQIRREAFVYCEQHQIKHNFQHKLVQQNYELMCEAWRFRRKGAWSQASLQAAVDAVRLGAMSIQRASKKYGIPKSTLIQQNYELMCEAWRFRRKGAWSQASLQAAVDAVRLGAMSILRASKKYGIPKSTLSDNLKAKIVIKKKMGRPRKGID

Sequence clustering based on sequence similarity using MMseqs2