Ahor035015.1
Basic Information
- Insect
- Anania hortulata
- Gene Symbol
- -
- Assembly
- GCA_963576865.1
- Location
- OY756417.1:4807395-4826166[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 9.9 1e+03 1.6 0.7 1 9 359 367 359 382 0.74 2 13 0.0073 0.76 11.4 0.0 2 21 420 439 419 440 0.93 3 13 0.045 4.7 9.0 0.3 3 23 446 466 444 466 0.97 4 13 5.3 5.5e+02 2.5 2.4 2 20 709 729 708 731 0.92 5 13 2.2 2.2e+02 3.7 5.0 3 15 738 750 736 758 0.78 6 13 0.00042 0.044 15.3 0.0 2 22 764 784 763 784 0.94 7 13 3.4 3.6e+02 3.0 2.5 6 23 896 913 892 913 0.93 8 13 0.0016 0.16 13.5 0.2 2 23 929 950 928 950 0.96 9 13 2.4e-05 0.0025 19.3 6.6 1 23 956 978 956 978 0.99 10 13 0.0024 0.25 13.0 2.3 1 21 982 1002 982 1004 0.95 11 13 0.11 11 7.8 0.6 3 23 1012 1033 1010 1033 0.91 12 13 0.26 27 6.6 0.7 1 20 1040 1059 1040 1063 0.92 13 13 0.0089 0.92 11.2 0.2 3 23 1072 1093 1071 1093 0.95
Sequence Information
- Coding Sequence
- ATGTCTGGACCGAACCAAAAGAGGTCTAGAAAGACTAAATTGGTGCCGCGATCGTTTAAAGACTGCGATGATTCCGATAATTTGCAGGAGGCACCTAGAAAGAAAGTATCCAAAGTGAACAGCAACTTTAATTCTATACATGATGAACCAACAACCTCGACATACCAACCCTTACAGTTCGACATTAAAGTTGAAGTTGAAGAGTGCGATGATGAAGAGCTATTTGACACAACAACAGATTTCATTTCAGAAACggaaataaaaacagaattatTAAACGAAAATGACTTATTCGAAGTTGAGGAACGAGACATTAACTCTCTTTTAGCCCAAGCTCTAAGTAAGAAAAAGGGCCAGTTTACCAAAGAAAGTGATGATGAAAATGTGGGCAATACATTAGCTCTCGAAAATGATCATGATTATAGCCCAAGAGATAAGAATAAAAAGAACCACTCAAGAAAACAGCCAAATTCACAGTCGCAAAACCCAACTTCAATCTGTCATTTGCAATTAGATGAAGACGCTATTTTAAATTCACTAAATGAACTTTGCAAAGGGGGTATGTCTTTAGCAGATAAAATTTTAGGTATAGAAATGAGAAATCTGTGGGGTCGGTGTAGAACGTATGATTATAACCCTAGtattccagaaaaaaaaatccaaatagCATTAAACACTTGGAAATACTGGAAGGTGTCGTTCAGAGGTGGAGAAGTTCCATTGATGTACAAATGCTATATGTGTGAAAAGGCCTGGTGGCATCTCGGACCGTTTCAAGAACATCTGAGCATTCATACAGAAGAAATGAGAATTGAATCTGAATCCCAGGCGCAGACTGCACAGTACAACATTGTAGCCTATTCATTGAAGTCTAATCAGgttttcaaagattttataaTAGATTCAAACTGTTGGAGATGTGGCTATGGTTATGAACACCATATTCAAAATGAGAAACTATTCCTCTGTGAGTTCTGTTTTCAGACATTCCAAACATGTTTAAAGCATAGAGCTCATGAGGCAGAAtgtgtaaaaaaacttaaatcatTAGTGAAAACAGGTCCTATAGTGATTTTTACTTGCCATATTtgcaatttaaaattacttttcaaaGATATATTGACGCAACATTACTTAGAATATCACAATGTTAGGTCAGACTTGCCCATGATTGTGGATGTTCGAACTTGCATGACCTGTTCTAAAAACTACTTGTCGCTACCATTCCAttactgtaacaaaaaaaactacagtaTAATGTGTAATTACTGTGCAAAAAGATTTCCGAGTAAGATAGCTTTGGAAATACATTTGCAAGAACAAAGTAACTACTGGTGTGTTGTCTGTGGTTATGTACTGGCAAAGAAATGTATGTTAGCGGAACATATGTTGAAACACACAAAGAAATTTGTTATGTTACACAAGTGTTTGTCGTGTAAAGACAATGTGTTGCTGTTTGACGAAGACTCAGTGAAGCAACATAAAATCATCTGGCACAAGCAGAAGGTCGACAAGAGACGAAACTATTTCGAAATGGTCTTGGTCCCACGTAAATTCATAGAAGCGCACAAACTTGAAGAACACGACCTCTCGTCCGCTATGTCGGGTCCTAGTGAGAAGCAGATCGTTGAACAAAAGGATAATGataGTCCACTTGTAAAAGTAAAGATCAAAGTAGACACAGAAATAGAAACCGACACCATCGATTTGGATGACAACAATCCATCActgaacattaaaataaaacaagaaaaaaaagaattcaatgatttcaatgaCAGTATCGTAAAAGAGAAAATGATCGAAGGAATGCATAACAATACCAGTTTTACCGAGGATGATGAAGGATACGAGTATATTCTATCAAGTGTGTTCAACGCAGCAAACAGTACGAATCTAGACAGAGAAATAGCCGAAGAGGCTGATGACTTCGAAGAGTTGATaaacgaagaattgaaaaaGTCAAAAGAAAGACAGCcaaggcaaaaaaaaacatttactaccACTGCTAGATCACCAGAAACCGTTAAAACAATAACAACTGATGAAAACGAATTGAAAATAGCCATCAGTAAAATAGAGGAAGTTGAACCAAAAACAGTAATTGAAGAGCCTGAACAAACAAAATGTGACTACCAAGACTGTGATTTTATTGCGACAGACAAACAAAACTTGTGTTCGCACAAAACTCACAAGGTAGTTATAATCAATTGCAGTAAATGCGGCAAATCGTTCTGTACAATTAAAGGGTATTTGTGCCATTTGGTCCATCATGGCTACCCACAGTGGTCTTGCCCAGACTGTTTAAGGACTTATGCGAGTTACAGTAGCCTAACTGCGCATATCAGGGTAACGGCAAACCGATCGTTTTGTAAGACTCAGTTTGTCGATAAATCCCGTGGGAAGCTCGCTGTAACGTTTCAGTGTAAGAGGTGTAAAGTGGTTGTGCCGAGACAATCTATCTTGGACCATTGGGAGACACATTTAGGCATTGGTGAAGCGTCCATTGTGAAGGTGGAAATCGAAGAGGAGGATGGGGAAGTCGATGTTGGTGGGGAAATAGAATATGATCAACCGGGTGAACCTGTGACGGATCTAACTGAGGAGGTTATGGAGAAAGTTATCGAGGCCCTGGTCGCGCGTAACAAGAGAGGGCGTACGCGCGAGGACAAGACGTGCATCGCGTGCGGCCGCGTCTTCGAACGCCGGAACGACTGCAAGCGGCACCACATCGAACATCTGCTCGCCAACGCCTACGGGACTAAaaTGATGTACAAAGGTCTCCGTTGCCAAATTTGCCAGATAATATATGATCGCGCAGACGGCTATAAGCAACACATGAGGGACCACGGCCACCTTCCCTTATACAAGTGCCATCTCTGCTTCAAGACCTTCAGCGACTCCAGCAACTACGTGAAACACAAGAAAACTCATAGCTCGTTGTACATTTGTGATATTTGTAAGAAGAAGTTCCAAGCTAAGGGGTCACTTATAAAGCATATGCAGTGCCACACAACGATAGAGCCCATCAAGTGTATATTCTGCCCCAAGCAGTACTTCACAGAGTCGGACTTCTCCCGGCACGTTCGCAACGCGCACAACCAGGGTCTGTTCAAGTACTCCTGCATCATCTGCAAGAAGAAGTTCAAGTCCCTCAAAGACAAATGGAACCACATGTGGATAGAGCATAAAGAGAGGAAGGTGAAAGCCGACTGCCCCGTTTGCAGtgccGAGTTCCGGAAATTGTCGGACGTGAAGAAACATCTGAAGGGCGACCACAATATGGACATGTCTGTCTTTAATGTGAAGGTGCTCAAGCAGTTGCTGCAGAAAATGAAAGAAGGTAAGGATGTCGGTGACGAGGACCAGCTGATAACGGTTAAGAGTGAACCAGACGATGATGAAACGCAGTACGCTGTGGTAAAGAGTGAGGATTCTAAGAAGAAATTgcaaatttacaacaaaaatgatGTGTTGATATTTATGAataatgaattgttaaaaaaatcgccgaataaatag
- Protein Sequence
- MSGPNQKRSRKTKLVPRSFKDCDDSDNLQEAPRKKVSKVNSNFNSIHDEPTTSTYQPLQFDIKVEVEECDDEELFDTTTDFISETEIKTELLNENDLFEVEERDINSLLAQALSKKKGQFTKESDDENVGNTLALENDHDYSPRDKNKKNHSRKQPNSQSQNPTSICHLQLDEDAILNSLNELCKGGMSLADKILGIEMRNLWGRCRTYDYNPSIPEKKIQIALNTWKYWKVSFRGGEVPLMYKCYMCEKAWWHLGPFQEHLSIHTEEMRIESESQAQTAQYNIVAYSLKSNQVFKDFIIDSNCWRCGYGYEHHIQNEKLFLCEFCFQTFQTCLKHRAHEAECVKKLKSLVKTGPIVIFTCHICNLKLLFKDILTQHYLEYHNVRSDLPMIVDVRTCMTCSKNYLSLPFHYCNKKNYSIMCNYCAKRFPSKIALEIHLQEQSNYWCVVCGYVLAKKCMLAEHMLKHTKKFVMLHKCLSCKDNVLLFDEDSVKQHKIIWHKQKVDKRRNYFEMVLVPRKFIEAHKLEEHDLSSAMSGPSEKQIVEQKDNDSPLVKVKIKVDTEIETDTIDLDDNNPSLNIKIKQEKKEFNDFNDSIVKEKMIEGMHNNTSFTEDDEGYEYILSSVFNAANSTNLDREIAEEADDFEELINEELKKSKERQPRQKKTFTTTARSPETVKTITTDENELKIAISKIEEVEPKTVIEEPEQTKCDYQDCDFIATDKQNLCSHKTHKVVIINCSKCGKSFCTIKGYLCHLVHHGYPQWSCPDCLRTYASYSSLTAHIRVTANRSFCKTQFVDKSRGKLAVTFQCKRCKVVVPRQSILDHWETHLGIGEASIVKVEIEEEDGEVDVGGEIEYDQPGEPVTDLTEEVMEKVIEALVARNKRGRTREDKTCIACGRVFERRNDCKRHHIEHLLANAYGTKMMYKGLRCQICQIIYDRADGYKQHMRDHGHLPLYKCHLCFKTFSDSSNYVKHKKTHSSLYICDICKKKFQAKGSLIKHMQCHTTIEPIKCIFCPKQYFTESDFSRHVRNAHNQGLFKYSCIICKKKFKSLKDKWNHMWIEHKERKVKADCPVCSAEFRKLSDVKKHLKGDHNMDMSVFNVKVLKQLLQKMKEGKDVGDEDQLITVKSEPDDDETQYAVVKSEDSKKKLQIYNKNDVLIFMNNELLKKSPNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -