Ahor034880.1
Basic Information
- Insect
- Anania hortulata
- Gene Symbol
- -
- Assembly
- GCA_963576865.1
- Location
- OY756417.1:2733881-2752047[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00074 0.077 14.6 0.2 2 23 287 308 286 308 0.96 2 12 0.0036 0.37 12.4 0.7 1 23 459 481 459 481 0.98 3 12 0.023 2.4 9.9 9.3 1 23 488 510 488 511 0.94 4 12 0.11 12 7.7 1.3 1 23 515 537 515 537 0.97 5 12 7.4 7.7e+02 2.0 0.9 1 23 542 565 542 565 0.81 6 12 0.018 1.8 10.2 0.3 1 23 569 592 569 592 0.92 7 12 0.00064 0.066 14.8 0.1 2 21 605 624 605 629 0.93 8 12 1.8 1.9e+02 3.9 0.4 2 23 682 704 681 704 0.94 9 12 0.011 1.2 10.8 1.1 2 20 720 738 719 741 0.89 10 12 3.1e-05 0.0033 18.9 1.4 1 23 747 769 747 769 0.99 11 12 2.6e-05 0.0027 19.2 4.2 1 23 776 798 776 798 0.98 12 12 0.00014 0.014 16.9 1.3 1 23 804 827 804 827 0.93
Sequence Information
- Coding Sequence
- ATGCGGTGTTGTGTACCAGGCTGTAAAAATGATTCGAGACATATTTCGAAGTCGGAAGGAATTACATTTCATGTGTTTCCCAGTGAGCCATCTCTCCAAGCAGCCTGGCTGCGGGCAGTCGGCAAGGACTCCTGGAAACCGCACAAGAGGAGTGCTGTGTGCTCCGAACACTTTCTCTGCGATGACATGTATGAGACGAAGAATGGTATGCGGAAAGTGAGGACTGGTGCTGTTCCCATTATTTTACAGGATTCAGGAAACTGTGACTATGGTGAACCTGCTTCCCTTAAGGTATGCAGAATATGTCTAGTGACAGACAACAAATTGTTTCCAATAAGGAAATATAAATTGGATCAAGCGTATGAACATCTGACAGGTTCTCCAGTGAGCGTAGAAGACAAACTCCCCCAGAAGCTATGCTACGAGTGTGTTCAGAGGCTGCTCAACTGTTCCCGCTTCAGGACGAAGAGTATGCGGGCCATGAGCCTGATGCTGGAGGTTCTCAAGAAGCAGGACCACCTCACAATTCAAAACCTAAAATCCATAAGCAGAATTAACAATCAACTCACATCGACTCTTGCACCGAAGTACTACGGCTCCGATCACTACGATTACCTTCTAGAAGATGATAGAAGTGAAAAGAAAGATCTAGATATCCCATCGCCTATTAACAATGAAGTATTCTTACAAGAGTTTGACGTTACACTTGACGTAGAAGATACACACAACGGTTCTTTAGAATATTCATCAGATGATTCTCTTCCTCTAGGagtaagaaaaagaaaaaaggtaaAGATTAAACAGAAAGAAAGAAGAGTAAGAAAGAAATCGAGTAAAGAAGTTGAGAGTGAAGaattaaaatgtatggaatGCGTTAAAACCTTTGTAGATCAAGGTGAATATTATAGTCATATGGCAAGTCATGATGAGtttttaaacCAACATTTAGATTCGACAACCGACAACCAAATAGCAAATTTCACACCGAAATATTACGAAAGCCAATTCAACAATGAcgtcacacaaacaaacaaagaaacaaacgATCTCAATCTAGACTTAGATTCCAAAATAAAGGACGAATTAAACGTCAAACTCGAAGATAACATAGAAGACGAATACGTAGCGTCGGAGAAAGACTACACAACAGACGACAGCGTAGTTCTAGAAGTGAAGAGAAGGAAGAAAGAAACGAAGAAGTTAAAGAAGAGAGCGCAAAAGAAGAATCCAGAACCGAAAATTGATAGGAGGAGGAAGCCGTTTTTGAGTGACGATCTTAACGAAACGCTTTTCACTATAACTGATCTGACGTATGAGGAGCAAGTTGCGGAGATTGAGAAGAGACAAGAGAGTTCTAATTATAAGAATGCAGTTTTTAAGTGTACAGAGTGTTACAAAGGTTTTTTGGATGAAGACGCTTACAATTCGCATATGTTGAGGCATACAGAGgaATGCGGCGAACACCGTTGCGCTGTGTGCAAGACTCATTTCAAACATCCCCACGCTCTGCGGAAACACATAACAGCGCATCACACGCAAAGGTTCAGCTGCAAGCAGTGCCCGTACGTGACGGCGCACCGGCAGTCGGCGCGGCTGCACGAGCGCTGGCACAAGGGCACCAAGTACGCCTGCCCGCACTGCCCCGACGAGTTCCTCAAATTTACGACATACATGGGCCATATTCGCATCAAGCACCCGTCAGACTTCGTCTGTCAACTGTGCGGGTACTCATTCGTCAGCGAGAAAGGGATAGCGCTACACAAGAAACTTAAACACAGACAGGAGAATGCACcgATTCCGGAAGACGGTCCACAATGCGAGTTGTGCAACATTCGCTTTATAGACTCGGAGGCTTTAAAACGGCATATCAGTGTCTCAGCACGACACAACTCTGTTGACAAAGGCTCAAGAGAACCGAACAAGCCGCCTAACGGAAGGAAATCAAAAGAGAGCAAAGAGAGAGACAAGAGAGCTAAAGATAGAAGAGAAAAGGAAGATTCGAAGATGTTCCCCAGCCAGTTAAGGAAGGCCGAAGGACCTATACCCTGCGAACAGTGCGGTCTCCAACTCGAAGACTCGCGGGCGTACCACGGCCACTTCCGGCGGATGCATCCAGACAAGAATCGAACCAATTACCCCTCCATGAAGTCACCCTGCATGTGCGAGGTGTGCGGGAGAATGTTCCAGAGCTACGCTCTCCTAAAAGACCACCGCTGGACCCACACAGGAGAGAGACCTTTCAAGTGCGATTCGTGTGGCAAGTCGTTTAGAATGAAACAAAGACTGGTAGCCCACAGGCGGGTGCACAGCGCACAGAAGGCGACCTACGTGTGCGCTGTGTGTGGGAAGCATTTTAGTACGCACAGCAACCGGCAGAGGCATATGTTTATCCACACGGGGCTGAAGCCGTTCAAGTGCGAGATGTGCGGGAAGGGGTTCAAGCACGCGAGCGAGAAGCGCGCGCACGTCACGTACGTGCACCTCAAGAAGCCCTGGCCCAAGCGCAGCCGCGGCAAGCGCCGCCCCGACCGCCCAGACCGCCCAGACGCGAGGCAGGTCCCCATGCAGACCCCACCCGCCATGCCGACCCCAGACATGGGGCTCCAGCCCATTTGGCCGTGCGACCCGAAAATGGGTCACGTGCAAGAAAAACCGCCTTACTACGctctaaaaatgtaa
- Protein Sequence
- MRCCVPGCKNDSRHISKSEGITFHVFPSEPSLQAAWLRAVGKDSWKPHKRSAVCSEHFLCDDMYETKNGMRKVRTGAVPIILQDSGNCDYGEPASLKVCRICLVTDNKLFPIRKYKLDQAYEHLTGSPVSVEDKLPQKLCYECVQRLLNCSRFRTKSMRAMSLMLEVLKKQDHLTIQNLKSISRINNQLTSTLAPKYYGSDHYDYLLEDDRSEKKDLDIPSPINNEVFLQEFDVTLDVEDTHNGSLEYSSDDSLPLGVRKRKKVKIKQKERRVRKKSSKEVESEELKCMECVKTFVDQGEYYSHMASHDEFLNQHLDSTTDNQIANFTPKYYESQFNNDVTQTNKETNDLNLDLDSKIKDELNVKLEDNIEDEYVASEKDYTTDDSVVLEVKRRKKETKKLKKRAQKKNPEPKIDRRRKPFLSDDLNETLFTITDLTYEEQVAEIEKRQESSNYKNAVFKCTECYKGFLDEDAYNSHMLRHTEECGEHRCAVCKTHFKHPHALRKHITAHHTQRFSCKQCPYVTAHRQSARLHERWHKGTKYACPHCPDEFLKFTTYMGHIRIKHPSDFVCQLCGYSFVSEKGIALHKKLKHRQENAPIPEDGPQCELCNIRFIDSEALKRHISVSARHNSVDKGSREPNKPPNGRKSKESKERDKRAKDRREKEDSKMFPSQLRKAEGPIPCEQCGLQLEDSRAYHGHFRRMHPDKNRTNYPSMKSPCMCEVCGRMFQSYALLKDHRWTHTGERPFKCDSCGKSFRMKQRLVAHRRVHSAQKATYVCAVCGKHFSTHSNRQRHMFIHTGLKPFKCEMCGKGFKHASEKRAHVTYVHLKKPWPKRSRGKRRPDRPDRPDARQVPMQTPPAMPTPDMGLQPIWPCDPKMGHVQEKPPYYALKM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00075958;
- 90% Identity
- iTF_00075958;
- 80% Identity
- iTF_00076599;