Ahor033310.1
Basic Information
- Insect
- Anania hortulata
- Gene Symbol
- -
- Assembly
- GCA_963576865.1
- Location
- OY756415.1:3311369-3317147[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.3 1.4e+02 4.3 0.2 1 23 88 111 88 111 0.92 2 12 0.58 60 5.5 0.5 3 20 141 158 139 160 0.94 3 12 0.13 14 7.5 0.2 1 23 215 238 215 238 0.92 4 12 2.8 2.9e+02 3.3 0.2 3 23 268 289 266 289 0.90 5 12 0.00071 0.074 14.6 1.5 1 23 310 332 310 332 0.97 6 12 0.0064 0.66 11.6 0.2 1 23 336 358 336 358 0.97 7 12 0.00014 0.014 16.9 0.2 1 23 363 386 363 386 0.94 8 12 0.012 1.2 10.8 6.7 1 23 392 415 392 415 0.98 9 12 0.00034 0.035 15.7 1.0 1 23 422 445 422 445 0.97 10 12 0.026 2.7 9.7 3.1 1 20 451 470 451 473 0.96 11 12 3.3e-06 0.00035 22.0 0.7 1 23 479 501 479 501 0.99 12 12 2.2e-05 0.0023 19.4 7.1 1 23 507 529 507 530 0.96
Sequence Information
- Coding Sequence
- ATGGGGAATGTTCCCGGCAAAGGCATATCTCTAGGTACGGCAGACCATGATGctggcaagtctggttattacgtTATAACAACAGATGTGTCTATAACTTCAAGTGACGCAAGGGCAACGGATGTGCCTACGGGTGATACAGATCTTAAGTTACACAGCGAGGTGTATTTACGCGATCTAGCGCTGAAGAAAGTTGGTAGGCAAAGCGCCATCGCTCTCATCCACAGCACGAATATGTGCCCCTTCAGATTCAACGGTTCGTTCATGTGCCTTTACTGCATCAGTCAATTCGGGAACATGTCAGAACTGACACAACACGTTGAGTCTGAACATAACCACGTAACAGAGGAGGACATAAGGAAGGGAATCATTAGGATACGCAAATATCAACCGGTTAAAGTCAACGTGCTAAACTTCGGTTGCAAACTTTGCAACAAAGAAATGTATAATTTTGAAGATCTGAAACACCATCTTATCGGTGACGCGATAGTTAAGACTAAGTGCGTGCGTGTACGGACAAGAGTAGCTAATATGAACAGCGACACGTATTTACGTGAACTTGAACAGAAAAAAATTAGTAGAGATAGCGCCATCGCGCTCATCCACAGCACGAACGTCTGTCCGTTCAAATACAGCAGATTTTTCATGTGTCTTTACTGCTCAAGCCGATATGTCAACATGTCAGAATTGGCGGAACATGTTGAGCTCCAACATAAACACGTAACGCCAGGCGAGATAAGAAAAGCAATAATTAGGATACATTGTTACAAACCGATTAAAGTCAACGTCCTAGACTACGGTTGCAAACTTTGCAACGACGAAATTTCAAATTtcgaagatttaaaaaatcatctgATCGGTAAACACAAGAAACCCATAGACCTTACTAATGATGGGGTTTGGCCTTACAAGATTACAGAAACTGAATTCATCTGTCTATTGTGCGAAAAGAAATTTGAACACTTTTGGCTTTTAAACAGACATATAAACGAGcattatacaaaatttatttgtgATCAATGTGGAACTGGATTCGCTTCAGACTTGCGTTTAAAAACGCACATATCCTCTCATGTGGTAGGGTCTTACCCGTGTGATGAATGCGGTAAAGTGTTTAATAGCTCCATGCTACGCCAGCAGCATGTTGAGCGAGTACACAGAAAAATCAAGAAGCATAAGTGCTTATACTGCACAGAGACATTCCGAGAATACAATCACAAGCAAAGGCACTTACGAACTGTACACGGGGTAAAGATGAGAAATTACAGATGCAATTTCTGCCCTAAAGTTTTCGATTCCACATCAGGTGTCCGAAGCCACGAGCGCTACACACATTTAAAAACGCGTAAATACAGATGCGATGTTTGCGATTATGCATGTGCAGTGAAAACCATGTTGACAGATCATATGTTTTGCCACTCGGATAAAAAGAACTTCCAATGCCAAGTCTGCAAAAAAGCGTATCCCAGAAAGAAGTCATTGGTTGAGCACATGAAGATACACAATAATATCCGGCGATTCGTGTGCCAGCACTGTGACAAAGCATTTATTCAAAAGTGCAGTTTGAAAGGGCACATGAAAACGCACCACAAGGAATTTCTAATGTAa
- Protein Sequence
- MGNVPGKGISLGTADHDAGKSGYYVITTDVSITSSDARATDVPTGDTDLKLHSEVYLRDLALKKVGRQSAIALIHSTNMCPFRFNGSFMCLYCISQFGNMSELTQHVESEHNHVTEEDIRKGIIRIRKYQPVKVNVLNFGCKLCNKEMYNFEDLKHHLIGDAIVKTKCVRVRTRVANMNSDTYLRELEQKKISRDSAIALIHSTNVCPFKYSRFFMCLYCSSRYVNMSELAEHVELQHKHVTPGEIRKAIIRIHCYKPIKVNVLDYGCKLCNDEISNFEDLKNHLIGKHKKPIDLTNDGVWPYKITETEFICLLCEKKFEHFWLLNRHINEHYTKFICDQCGTGFASDLRLKTHISSHVVGSYPCDECGKVFNSSMLRQQHVERVHRKIKKHKCLYCTETFREYNHKQRHLRTVHGVKMRNYRCNFCPKVFDSTSGVRSHERYTHLKTRKYRCDVCDYACAVKTMLTDHMFCHSDKKNFQCQVCKKAYPRKKSLVEHMKIHNNIRRFVCQHCDKAFIQKCSLKGHMKTHHKEFLM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -