Ahor015908.1
Basic Information
- Insect
- Anania hortulata
- Gene Symbol
- -
- Assembly
- GCA_963576865.1
- Location
- OY756399.1:18984732-18991549[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.13 14 7.5 2.1 2 23 33 54 32 54 0.95 2 13 2.9e-05 0.003 19.0 4.0 1 23 92 115 92 115 0.98 3 13 0.00031 0.032 15.8 4.4 1 23 117 139 117 139 0.97 4 13 3.7 3.9e+02 2.9 0.0 1 9 175 183 175 197 0.82 5 13 0.32 33 6.3 0.6 3 23 229 250 227 250 0.90 6 13 4.3 4.5e+02 2.7 1.9 3 19 259 275 257 279 0.79 7 13 3.9e-05 0.0041 18.6 0.5 1 23 285 307 285 308 0.94 8 13 0.039 4 9.2 0.2 3 23 331 352 329 352 0.95 9 13 6.1e-05 0.0063 18.0 0.4 3 23 359 381 357 381 0.95 10 13 0.036 3.8 9.3 0.1 1 23 413 435 413 435 0.96 11 13 8e-05 0.0083 17.6 5.2 1 23 441 463 441 463 0.97 12 13 7.4e-05 0.0077 17.7 1.0 1 23 469 491 469 491 0.96 13 13 2.5e-06 0.00026 22.4 1.9 1 23 497 520 497 520 0.98
Sequence Information
- Coding Sequence
- ATGGCTGCTCTTTCGAAGTGGGTCCCCATAGGGACGGCCCCGGATCAGCCTCAGTCACATCTGAAACTCACCACCATAGACAAAATCGGTGGTATCTACTGCCAGATTTGTCATTCTACATttggaaataaaaaagattatgaCACTCATTACGTTAAGCATGAAACGGGAAGCAAAGATGTAACATACACATGCGTCGTTTGCCGTAAAGATATAGTTGGCTATCCCAGCTTTCGAGGTCATTGTTACACAATTCATGTCATGAAAgataaatttaaATGCGATCACTGCAACAAGATGTTTTCAAAACATACTGCTCTCATCAGTCATATTGAAACTATGCATCAGTTCAAATGTCCGACATGTCataataaatTTAAATCTCAAAAAGAACTTACCATGCATCAAATTTACCACAAAAATGAACACTCTAGTCCACCATACAACTGTCAAGTTTGTACAAAGCAAATAGAAGACACCAACGATTGCGAGCAACACCTTGAAGAACACTGCTCTGTGTCCTACTCCTGCCCCATTTGCAATGAAGCCATTAACAAAATACAAGACGGAGCTATTCATCTGGCAAAGCATTTTGGCGATGTACTTATTGAAAACGATGAGTCAGATTCAGAGGACAATGAATTTTCTAACGACAGCTCGATAGATCTTCTCGGTGGCATATTCTGTTCGTACtgcaatcaaaattttaaagccAGACCAGAGTTTGATAACCACTTCATGCTAgaacacgaaaataaaagcATTGTTTATGGCTGTAATATTTGTGGAAAGGAATACGAGAAATACTTTGTCTTTGCCAACCACTGCTATAATCATTCTAACAAAGACAAGTTCCAGTGCGAAGTGTGCTCCAAAAGTTTCCCGCGTCTCTCTCTGCTCGTGATCCACACGGAGGCGCACCACTCGGGTGCGGGCGGTGCGGGCGGTGCGGGCggtgcgggtgcgggcgcgggcgcgggcgcgctcGCATGCAGGCAGTGCGGGCTGGCGCTGCGGTCCGCGCGCCGCCTCAGGGACCACTACCGCGTGCAGCACGACATCTGCTACAGCCACTGCCCTGAGCAGGACTGCGGGAAGATCTTCACCACCCCCAAAGAGCTGGTGCTCCACCTGAAGGAGCACCGCGCGGGCGCGCACTGGTGCCGAGCGTGCGGGCTGCGCTTCGCCTCGCCCCGCGCCTGCCTGCGCCACCTGCCCGTGCACCGCACCAAGCGCTACGCCTGCCCCGTGTGCGCGCGCGGCTACAACGAGAAGTACCTAGTCATGAAGCACATCACCCAGCATTTCTCGTCCGTGCTGCACGTATGCAAGATCTGCGGGCGCGTGTACTCCCACCGGCACCGCCTCGTGCAACACATGAAGGTCCACGAACAGGCCAAGGGCCACGCCTGCGCCACCTGCGGCAAAGCCTTCGCGAAACGCTTCCTGCTCACCCAACACCAGAACATACACTCCGGCGCCAAGCCCTACAAGTGCACTAACTGCCCCAAAACATTCGCTAGCGTacccaactttaaaaaacacatgAAGAAAATGCATAACATCACCCGTTTAGATTTGAAAGTGTATTACGATGAAGCCGAACAGAATACTaacaaaatttctaatgaaGATAACTTGGATGTTAATCCGTCGAGCTCGACGTCCTTGGAATCGTTAGATGCCCCGAACGGTTTTGACGAGACGAACGAGTGCGGGTGGAATCTGGACGCCCTGGATCCGCATGTGATGGAGATGATCGAAGAGAACCTCGACGCTCTCGATGCCAGAACGAACGATATCAGCGAAATAGAGGCAGATCTCTGGGTGCAGAGTCAGACTATTACATCAGCACCGGCGAGCGAGTACAGCGAGTACTCACTGCCGCTGGCCGCGCCCCCCCCGCGCGAGTACGGGCCCGAGCTGGTGACCCTGGACGACCACTGCCTGCCGCACATCCCGCCGCTGCTCACCATCAACAGCGCGCGCCTGCCCCCCCTCCAGCCCCTCCCGGCGCCCCCCCACCAGCCCCTGCCGCCCCTGCACACCCTGCACCCCCTCCCGCACCCGCTCGCCCTGCAGCCCGACAAGTGGGAGCCGCCCGTGTTCGCCAAGCTAGCGGATCTGGCCTACGCGGACCTAGCCGAGGTAATGAACGCtgatatattttaa
- Protein Sequence
- MAALSKWVPIGTAPDQPQSHLKLTTIDKIGGIYCQICHSTFGNKKDYDTHYVKHETGSKDVTYTCVVCRKDIVGYPSFRGHCYTIHVMKDKFKCDHCNKMFSKHTALISHIETMHQFKCPTCHNKFKSQKELTMHQIYHKNEHSSPPYNCQVCTKQIEDTNDCEQHLEEHCSVSYSCPICNEAINKIQDGAIHLAKHFGDVLIENDESDSEDNEFSNDSSIDLLGGIFCSYCNQNFKARPEFDNHFMLEHENKSIVYGCNICGKEYEKYFVFANHCYNHSNKDKFQCEVCSKSFPRLSLLVIHTEAHHSGAGGAGGAGGAGAGAGAGALACRQCGLALRSARRLRDHYRVQHDICYSHCPEQDCGKIFTTPKELVLHLKEHRAGAHWCRACGLRFASPRACLRHLPVHRTKRYACPVCARGYNEKYLVMKHITQHFSSVLHVCKICGRVYSHRHRLVQHMKVHEQAKGHACATCGKAFAKRFLLTQHQNIHSGAKPYKCTNCPKTFASVPNFKKHMKKMHNITRLDLKVYYDEAEQNTNKISNEDNLDVNPSSSTSLESLDAPNGFDETNECGWNLDALDPHVMEMIEENLDALDARTNDISEIEADLWVQSQTITSAPASEYSEYSLPLAAPPPREYGPELVTLDDHCLPHIPPLLTINSARLPPLQPLPAPPHQPLPPLHTLHPLPHPLALQPDKWEPPVFAKLADLAYADLAEVMNADIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00075873;
- 90% Identity
- -
- 80% Identity
- -