Ahor035089.1
Basic Information
- Insect
- Anania hortulata
- Gene Symbol
- Bcl11b
- Assembly
- GCA_963576865.1
- Location
- OY756417.1:5940700-5955439[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0026 0.27 12.9 2.1 1 23 252 275 252 275 0.92 2 11 0.0044 0.46 12.1 0.1 2 23 282 303 281 303 0.98 3 11 0.034 3.5 9.3 0.5 2 23 308 330 307 330 0.95 4 11 0.064 6.6 8.5 4.0 1 23 334 357 334 357 0.95 5 11 5.9e-06 0.00061 21.2 3.5 3 23 362 382 360 383 0.94 6 11 0.24 25 6.7 5.0 3 23 388 408 387 409 0.90 7 11 0.0017 0.18 13.4 0.3 3 22 424 443 423 447 0.91 8 11 3.8e-05 0.0039 18.6 0.1 2 23 456 478 455 478 0.96 9 11 0.013 1.4 10.6 6.8 1 23 484 507 484 507 0.95 10 11 0.00015 0.016 16.8 0.6 2 23 517 538 516 538 0.97 11 11 9.1e-05 0.0095 17.4 2.7 1 23 544 567 544 568 0.97
Sequence Information
- Coding Sequence
- ATGTTTTCCATTAAACTTGAATATGATAAGAAAGAATTGGATCCTGGGATATGCCGGGGTTGTCTAAGCAGTGATCGTCGTGTAATGATACTTCGTAATCAAGTCGACCTGTTTTTGAGTCTTTTGGGAGCCCAGCATCAGTTTTgcGGACCGCGTGTGATATTGTGTTGGGAATGTGTGGCGCATCTCAAAAGAATTCAATCATTCCAAAATAGAATACAACATGCACAGTTCATATTGCAACAATCACTATATAAACTGGATAGTCTCCCTCTTACAACACTATCAAACTTAACTACGACCAAAAATAATTGCTACGATACCAACTTTGAATACAACTTGGAAGACATTGCGTCGAAACCAAATGAAGAAATTGGTACTAAAGAATACCTTGTTAACATAATCAAAGAGGAGCAAAGTGATGATGACTTCAATAATGAAGACATGTCCAATGATGAAGACAATTTCAACGATAACAGTTTAAGTGATAACGAAATATTGACTATAGACTATAACAAATTGAAAGAGTTAGAAAACactcaaataaacataaaaaatgacAGCGCAGAAACTAAAtcacaagaaataaaaaagcaaaGCATATTTAAGTATGAGTCAAAAGCGAATATAACAAAGTTGGATGTGAATATTTCTGTTACAAGGAAACATTGTAGCAAAATAGTTCTGAACGAGAAAGAGATAGAAGACGTGCTTGAAAGAGACAAATCATGTTACGGATATGGCAAGTTGCCATATAAATGTCAGAACTGCAAGAACGCGTATAGAAGAGCCATTGATCTTAAAAGGCATAGAACATTCAATCATATGGAGTCGCCGCCCTCGAAGTGCCCGGAGTGCAACTCCCCCGTGCCCTCGTGGGAGGGCCTGCACGCGCACTGGCGGCGGCACAACGTGTACCTCCAGTGCGCCTTGTGCGGCTGGCTGTCGCACTCGCGCGCATCCCTCACGCGCCATCTGTCGCGAGTGCACACGCGACTGTACGCGTGTAAAACGTGCGACTTCTCTTGCAATACATTACGGGAGTTCAGCAACCACTACAAAGAGTCCCACGAGAGGATTATATGCGACCACTGTGGTAAGACCTTCATCAAGAAGAAAACGTTGGAGATTCACATAAAGCGCCACCACACCCCAGCGACCTGCATCGAGTGTAACCGCACGTACGCCCACTACCACGTACTCGAGAATCATTACCGCATGCACCACCCGCACCTGACGCGCGGCAGCCTCAGCGTGGAGCTGGCCTACTGCGTCGAGTGCGACAAGCAGTTCGCCAGTGAATACAAGTATAAGAGACATCTGGCTACTGCAGCGAAACACACGCCGCCTAAGAGAGTGAGAGTCCCGTGCCCCGAGTGCGGCAAGGTGTTCGCGCGCAAGATCCGCATGACCAACCACTACAAGTCCGTGCACGTCAACACGACCAAGCACCGCTGCGACATCTGCAACAAGTCATTCTGCTCTGCGTTCTCAGCGCGCACCCATAGACAACACGTGCACGAAAAAATACCTATGCCCAAGAACAAGATGTGCGATATCTGCGGCCGGGGATTCAGCACTAACCGCATCCTAGCGAACCACCGGCGCACGCACACGGGCGAGCGGCCGTACAAGTGCGAGCACTGCCCCGCCACCTTCGCGCAGAGCACCGCCATGCGCACGCACGCGCGCACGCAGCACCACAAGCAGAGGGAGCCACACGCCCTGTGA
- Protein Sequence
- MFSIKLEYDKKELDPGICRGCLSSDRRVMILRNQVDLFLSLLGAQHQFCGPRVILCWECVAHLKRIQSFQNRIQHAQFILQQSLYKLDSLPLTTLSNLTTTKNNCYDTNFEYNLEDIASKPNEEIGTKEYLVNIIKEEQSDDDFNNEDMSNDEDNFNDNSLSDNEILTIDYNKLKELENTQINIKNDSAETKSQEIKKQSIFKYESKANITKLDVNISVTRKHCSKIVLNEKEIEDVLERDKSCYGYGKLPYKCQNCKNAYRRAIDLKRHRTFNHMESPPSKCPECNSPVPSWEGLHAHWRRHNVYLQCALCGWLSHSRASLTRHLSRVHTRLYACKTCDFSCNTLREFSNHYKESHERIICDHCGKTFIKKKTLEIHIKRHHTPATCIECNRTYAHYHVLENHYRMHHPHLTRGSLSVELAYCVECDKQFASEYKYKRHLATAAKHTPPKRVRVPCPECGKVFARKIRMTNHYKSVHVNTTKHRCDICNKSFCSAFSARTHRQHVHEKIPMPKNKMCDICGRGFSTNRILANHRRTHTGERPYKCEHCPATFAQSTAMRTHARTQHHKQREPHAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00074969;
- 90% Identity
- -
- 80% Identity
- -