Ahor023920.1
Basic Information
- Insect
- Anania hortulata
- Gene Symbol
- -
- Assembly
- GCA_963576865.1
- Location
- OY756404.1:11966864-11982133[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.8 1.9e+02 3.9 0.4 2 20 7 26 6 28 0.87 2 13 1.6 1.6e+02 4.1 0.0 2 21 34 53 33 54 0.90 3 13 0.15 15 7.3 0.3 1 12 214 225 214 234 0.85 4 13 0.00012 0.012 17.1 1.2 1 23 391 413 391 413 0.99 5 13 0.00022 0.023 16.2 3.4 1 23 429 451 429 451 0.98 6 13 0.52 54 5.6 0.1 1 23 476 497 476 497 0.87 7 13 2e-05 0.0021 19.5 0.9 2 23 503 524 502 524 0.96 8 13 0.0017 0.18 13.4 3.0 1 23 540 562 540 562 0.98 9 13 3.7e-06 0.00038 21.8 4.1 1 23 568 590 568 590 0.97 10 13 0.0035 0.36 12.5 6.5 1 23 596 618 596 618 0.98 11 13 2.2e-06 0.00023 22.5 0.4 1 23 624 646 624 646 0.98 12 13 0.00039 0.041 15.4 0.5 1 23 650 672 650 672 0.97 13 13 0.00036 0.038 15.6 0.1 1 23 680 703 680 703 0.96
Sequence Information
- Coding Sequence
- ATGGGTGACCTGAGTTTGAAATGTCCACTCTGTTGCAATCAAACTTTTGATTCAAAATTATCACTTGTTGAGCATTTAGCAAATATACTAACCAATCTAACCTGTCCTATTTGCGATAATAAGTGGTCATCATTGGCCCTTCTCATAGAACATTTAAATCTTGATGATTGCCAAAGTCAACACataacaattaaaactttaGACAAGACCGATGAGAATTCAATTGAAAAATCCTTGTCACAAACAAATCTCAGTGATATTGaaaataatgttgaaaataataaatttgatagTCACAATTCACCTGAAAACAGTCATTTACCATCTGAGAAAAGTCacatagaaataaaacttactaCTGATGCTCTAAATGAGGGTAAAATGTATGTGGAGTATGTGAACCATCAAAAGTCAAACACAATGTTGCCAACCCAAGGACTAAAACTGTTGACGGAGGATGGGGTGATGGAACAGTTTGTGGTAATGTCTCCGAACAGTGAAGGTCTTACGAAATGGGGTTCTATAGTAACTAAACAAAATGAAGATGAAACTATCTCTGTAACAACAGATAATGATCCAAAAGAGTCTGAAACTGTTATAGCACCTTCTGAAGTGGAAATGGAAGATAACCAGGAGTTGTACAGTTGTAACACATGTGGAGTCTCGTTCTCTTCTGTTGCTGAACATATTCAAAACTATCACAATGATCAAGAAGTAGTAGTTGAgGAGCCTCTTGAGGACGATGCCAGTGCATTGGTTGAAACACTGGAGTATGACACACTCAACAATGAATTACTTACTGTAAATAAACCAAAGATGACACAACAGATCATTACAGAGTCAGGTGAAATAGTAGTAGCATCTATTATGATGGACAATACCACTGAAACTGCAGCTGAGGAGTTTATTGTTCCAAATTTTGTGGTGGAGAAAGTTGACAAACAAATTCGTAACCAATTGAAACGATTTGTACAAATAGATAAATTCTGTGATAGTCTTGTAAAGAACATCAACCCTAATAATGAAAAAGAGGGTGCTTACCATAAAGTGGTTGTAAACGAAGTGAAAACACCAGATGGaggcaaacaaaaaacatactCTTGTTTGTCATGTAATACTATTGTCAATAAGCTGGACGACTTTAAACTGCATCCATGTAAAACTTTGAAATATCAATGTGTATACTGTTCGGTTGCTTACGATAACTCAAAATCATTGTGCGCTCATATGAAAGTACACAAAGTGAAATCAGatgcAATACTTCCCGTTGACGGTCCAGCAAGACACGAATGTGAGGTCTGTAATACATCATTTCAATcgaataaatcattaaaattacacAAGAGGATGCATGATCCCGTTAAGGCTCGTCAAATAGAACCCCCAGTGGAAAAAGCAGATGGCACAGAAGGCAGCAACTGCAGTTACAAATGTCCGACGTGCGAGAAGATGATACCGGTAGACTACCTTTCCATTCACCAAGAGTCGCACAAGTCGAACGAACTGAATTGTAGTATTTGCAACAAGAAGTTCTACTCTAGTGAATACCTTCAGATGCATATGACTGTACATAATATGGATAAGGTAACAGTTAATAAACCGGATAAAGAACTTCCATATAGTTGTTCGTTCTGCAACAGAAGATTCGTCAGGCCACACGAAAAGGTCAAGCACGAACGAATACATACAGGCGAGAAACCACACTCGTGCGCGATATGCGGCAAGTCGTTCCGCGTGTCCTACTGCCTCACGCTGCACATGCGCACGCACACAGGTGCGCGCCCGTACACCTGCGCGCATTGCGGCAAGAGGTTCAAAGCACACAGCGTATACAATCACCACCTGCTGACGCACTCGGAGGTGCGCGCGTACAAGTGCCCGTACTGTCCCAAGGCGTTCAAGACCTCCGTGCAACTGGCGGGCCACAAGAACTCGCACACAAAACCTTTCTCTTGCCCACACTGTAATAGGCCGTTCGCGTCTCTGTACGCGGTGCGGGTGCACTCGGAGACGCACGCGCGGCAGAACAACCTCAAGTTCTCGTGCTCGCTCTGCGGCGCGAGCTACGCGCGGGCCTTCGCGCTCAAGGACCACTTGAAGCAGGTCCACCAGCAGGACATCGACCCCATTGAACTGTCCATGGTAAACATCCCTGAGATCAAGGATGACTGGGCTTTGAAAGAGAGCACAGACGGTGATGTAGAAACTATAACGCTCGGCCATAAGGATTTAACACAAGAGatatcTGAACTGGAAATGTCTAGCGAAATAATAGATGCTATCAAAGCtgcaaattaa
- Protein Sequence
- MGDLSLKCPLCCNQTFDSKLSLVEHLANILTNLTCPICDNKWSSLALLIEHLNLDDCQSQHITIKTLDKTDENSIEKSLSQTNLSDIENNVENNKFDSHNSPENSHLPSEKSHIEIKLTTDALNEGKMYVEYVNHQKSNTMLPTQGLKLLTEDGVMEQFVVMSPNSEGLTKWGSIVTKQNEDETISVTTDNDPKESETVIAPSEVEMEDNQELYSCNTCGVSFSSVAEHIQNYHNDQEVVVEEPLEDDASALVETLEYDTLNNELLTVNKPKMTQQIITESGEIVVASIMMDNTTETAAEEFIVPNFVVEKVDKQIRNQLKRFVQIDKFCDSLVKNINPNNEKEGAYHKVVVNEVKTPDGGKQKTYSCLSCNTIVNKLDDFKLHPCKTLKYQCVYCSVAYDNSKSLCAHMKVHKVKSDAILPVDGPARHECEVCNTSFQSNKSLKLHKRMHDPVKARQIEPPVEKADGTEGSNCSYKCPTCEKMIPVDYLSIHQESHKSNELNCSICNKKFYSSEYLQMHMTVHNMDKVTVNKPDKELPYSCSFCNRRFVRPHEKVKHERIHTGEKPHSCAICGKSFRVSYCLTLHMRTHTGARPYTCAHCGKRFKAHSVYNHHLLTHSEVRAYKCPYCPKAFKTSVQLAGHKNSHTKPFSCPHCNRPFASLYAVRVHSETHARQNNLKFSCSLCGASYARAFALKDHLKQVHQQDIDPIELSMVNIPEIKDDWALKESTDGDVETITLGHKDLTQEISELEMSSEIIDAIKAAN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00074778;
- 90% Identity
- -
- 80% Identity
- -