Ahor033343.1
Basic Information
- Insect
- Anania hortulata
- Gene Symbol
- -
- Assembly
- GCA_963576865.1
- Location
- OY756415.1:3542472-3560000[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00014 0.014 16.9 3.7 1 23 8 30 8 30 0.98 2 17 0.0056 0.59 11.8 3.0 3 23 37 58 35 58 0.96 3 17 0.038 3.9 9.2 5.0 1 23 63 85 63 86 0.94 4 17 0.00038 0.039 15.5 0.1 1 23 93 116 93 116 0.97 5 17 0.00033 0.034 15.7 0.0 1 23 122 144 122 144 0.96 6 17 2.6e-05 0.0027 19.1 2.4 1 23 150 172 150 172 0.98 7 17 0.001 0.11 14.1 4.1 1 23 178 200 178 201 0.96 8 17 2.4 2.5e+02 3.5 4.8 1 23 382 405 382 405 0.92 9 17 0.1 11 7.8 1.8 2 23 432 454 431 454 0.92 10 17 0.17 18 7.1 1.6 1 23 476 498 476 498 0.97 11 17 0.16 16 7.3 1.6 1 23 502 524 502 524 0.80 12 17 0.00055 0.057 15.0 1.9 2 23 530 552 529 552 0.93 13 17 0.31 32 6.4 1.2 1 19 557 575 557 580 0.84 14 17 8.9e-05 0.0093 17.5 1.9 3 23 589 610 587 610 0.94 15 17 3.1e-06 0.00032 22.1 0.6 1 23 619 641 619 641 0.98 16 17 8.3e-06 0.00086 20.7 1.1 1 23 647 669 647 669 0.98 17 17 0.0091 0.95 11.1 2.0 2 23 676 697 675 698 0.92
Sequence Information
- Coding Sequence
- ATGAACGAGCATAGTACGAGCTTTATGTGCCACGTTTGCGGCAAGAAATTTATATCGGATCACAGGTTGCAGACGCATATAATGATGCACAAACGAACGAACATATTCTGCAAGCATTGCAATAAAGACTTCAAAACCGTTGCGTCTAGGAACTACCACATACGGAAAGAGCATAACGAAGCACCTTATAAGTGTCCAGAATGTGCAGTCAGTTTTACACAGTACCATCACAGATTGAAGCATTTGGTTGAGCACCATAAATTGAAGAAACCGGAGTTTAAGTGTGATATTTGTGGAAGAGAGTTGGCCAGTTCCGGAGGGCTTGCCGCGCATAAGAGGTATTCCCATCTAAAAACAGTGCAGTACCCTTGCGATATATGTGGAAAAGTGTTTGCGTATAAATGGATTTGGCAGAGACATATAGACGTTCATACTGGTGCCAAGAATTTCGAGTGCAAGTTCTGTAATAAGAAATTCGCGAAGTCGTACTCTTTGCAAATGCATGAAAGGATTCATATGAACGATAAACGATATGTGTGCAGTTTGTGCAAGGCTGCGTTTATACAAAAGTGCAGTTTGAAGAACCACACTAAAGTTCATCACCCAGAGGCGGATTTAAGCAAACTtgcAAATTCCACAATTGAGATCTCCATTGACCCACCGAGACAGTCTGCCCATGGCTTGTGCCATTGCTGCCTGGAGCTTACATGCCAGAAGAGCCTGTGGCAGACATATGAGTGGATGGGCTGCATGGAAATATATGGGGAGATGCTGAAGGAATGTTTCGGCTTAgatTTGTCACTTCAGCAGAACGCGAAGATCTGTGAAGTGTGCGTAACACAGCTCCGCAACGCGGTGCGGTTCAGGGTGCAGGTGGCTCGCTGTCAGACACAGTTGTGGCGACGAGATGTTAAATCAGATGATCAAGAATCAGCTCAAAGAACAAAGACTGTACAGCAAGCAATCAAAGTAGAACATAATGACGAGACAGATGATCCTGAAGAACAAGATGTACACTAtgGCTGCAAAGTTGACCGCAGGACAATAGCCTTCCAGTCAAGCAAGTTCACAAGACCTCGAAGAAACGTTGGCCTACTCTTAGAACATTCCACTATCTGCCCATTCAAGTACAGTCAGGCGTACTTCAAATGCTTCTACTGTACTAAAAACTTCCTTGTCTTCCAAGAATTAAGGAGCCATGTTAAAGACTGTCATAAAAATTTGGCTTTCATTGACATAGCTAAATGCATAACAAGACCTAACGATCAAGTCAAGGCTGATATTAGTGAGATCTCTTGTAGGACTTGTTTTAAAAACTGCACGAATTTAAAAGAATTGGCGACACATTTAAGCGAAGCACACAGTGTGATATTTGATGATAACCCAGCGGAGTCCATACTAGGTTACGACTTagctaataataagtttaaGTGCTCAGTTTGTAAGGAGGAGTTCTTATTCTTCAAAACTTTAGGAAAACATATGAACGAGCACGCTACAAGCCACGTATGTGATGTTTGTGGGAAATGTTTCCTTCTTATAGAAAGATTGAGGTCTCATGTCCAATTGCATTCCGAGGTTGCGATAAAATGTATacactgcaacaaaaatttCCCAACGAAACCGTCACTGAAAAGTCATATCAGATACATGCATGAGAGGAAACCGTTTTCGTGCTCGATTTGTACCGAAACGTTTCCGACTTATAGAAAACGGTTGCAGCATTTCGTGGAAAGGCACGGGCGAGCGCCTTTGAGCTTGGACTGTGAACAGTGCGATAGGACATTCGGCTCAAACAGTAGCTTGAAACATCACGTCAAATATCAGCACCTAATGGTGCCTAAAGAGGCGAAGTATACATGTGAAGATTGCGGACGGAGGTTTAAAACGAAGCGGGTGCTGACCGGCCATATGCTAGTACACTCGGGTGAGAAAAACTTTGAGTGTGACGTGTGTAAAAAGAAGTTTGGGAGACAAAACTCGTTGAAAGAACATCTGAAGATACATAGTAATGATAAGAGATGGACGTGCGGCGCGTGCGCCGTTCGCTTTGTGCAGAAGTGCAGTTTGAAAAACCATATTAGAGTACATCACGCTGAATATAATATGGTAGATTtgattgtttataaaaatccagATAAATAA
- Protein Sequence
- MNEHSTSFMCHVCGKKFISDHRLQTHIMMHKRTNIFCKHCNKDFKTVASRNYHIRKEHNEAPYKCPECAVSFTQYHHRLKHLVEHHKLKKPEFKCDICGRELASSGGLAAHKRYSHLKTVQYPCDICGKVFAYKWIWQRHIDVHTGAKNFECKFCNKKFAKSYSLQMHERIHMNDKRYVCSLCKAAFIQKCSLKNHTKVHHPEADLSKLANSTIEISIDPPRQSAHGLCHCCLELTCQKSLWQTYEWMGCMEIYGEMLKECFGLDLSLQQNAKICEVCVTQLRNAVRFRVQVARCQTQLWRRDVKSDDQESAQRTKTVQQAIKVEHNDETDDPEEQDVHYGCKVDRRTIAFQSSKFTRPRRNVGLLLEHSTICPFKYSQAYFKCFYCTKNFLVFQELRSHVKDCHKNLAFIDIAKCITRPNDQVKADISEISCRTCFKNCTNLKELATHLSEAHSVIFDDNPAESILGYDLANNKFKCSVCKEEFLFFKTLGKHMNEHATSHVCDVCGKCFLLIERLRSHVQLHSEVAIKCIHCNKNFPTKPSLKSHIRYMHERKPFSCSICTETFPTYRKRLQHFVERHGRAPLSLDCEQCDRTFGSNSSLKHHVKYQHLMVPKEAKYTCEDCGRRFKTKRVLTGHMLVHSGEKNFECDVCKKKFGRQNSLKEHLKIHSNDKRWTCGACAVRFVQKCSLKNHIRVHHAEYNMVDLIVYKNPDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -