Ahor035399.2
Basic Information
- Insect
- Anania hortulata
- Gene Symbol
- -
- Assembly
- GCA_963576865.1
- Location
- OY756418.1:905605-914139[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 3.2e-06 0.00033 22.0 1.1 1 23 127 149 127 149 0.97 2 18 0.00013 0.014 16.9 0.6 1 23 155 177 155 177 0.97 3 18 0.00054 0.056 15.0 7.9 1 23 183 205 183 205 0.96 4 18 0.0019 0.2 13.3 3.5 1 23 211 233 211 233 0.98 5 18 2e-06 0.00021 22.7 2.0 1 23 239 261 239 261 0.97 6 18 0.0028 0.29 12.8 2.6 3 23 269 289 267 289 0.98 7 18 2.4e-05 0.0025 19.3 2.9 1 23 295 318 295 318 0.97 8 18 2.2e-07 2.3e-05 25.7 0.6 1 23 424 446 424 446 0.98 9 18 2 2.1e+02 3.8 0.8 1 23 451 474 451 474 0.89 10 18 0.018 1.9 10.2 1.7 1 23 480 502 480 502 0.98 11 18 2.8e-05 0.0029 19.1 2.2 1 23 507 529 507 529 0.98 12 18 7.2e-06 0.00075 20.9 2.9 1 23 535 557 535 557 0.97 13 18 9.5e-07 9.9e-05 23.7 0.5 1 23 563 586 563 586 0.94 14 18 0.00042 0.044 15.4 2.4 1 23 593 615 593 615 0.97 15 18 4.9e-06 0.00051 21.4 1.3 1 23 621 643 621 643 0.98 16 18 9.8e-05 0.01 17.3 2.7 1 23 649 671 649 671 0.98 17 18 3.7e-05 0.0039 18.7 0.5 1 23 677 699 677 699 0.97 18 18 9.5e-08 9.9e-06 26.8 0.7 1 23 705 728 705 728 0.97
Sequence Information
- Coding Sequence
- ATGACGGAAACTATCTGCGATACAAACACGATCAAAGATGAACCTGTTGACTGTAACGAGTCAAATCCACCAAGTCCAGAGGAAAAACTAGAAGTAAACATAGATCCCAATGATTATTATGTCAGCGTAAAGGGTGAACCTCCAGACCCCTCCGAAGAAGCAGACATTATTATGGAAAATGAACAGAGTCCCTTCGGGAATGAGTATCAGAAGTATCATGTAGATGTCGGAATAAGTTgcttaaaaaatccttatgAATACCCACCAGAGTTCATGACGAACAATATAGAACCCAAAACTAAGCATAAAAAACGTAAATCAGTTCCTAGAAAAATCATTCAGGCCAAAGAGACCTCTGATGATAGCGATGATAAATTGCATGTGTGTACAACATGCGGGAAGTCGTATAAGTCAAAACCTAAGTTAATTATACATATAAGAGTACACACCGGAGAGCGCCCCTTCATTTGTTCAGTCTGCAAGAAAGGTTTCCGGACAAATTGGACTATGAAAGCTCATGAACTCACTCATACCGGCATAAAACCGCATTGCTGTTCGCaatgtgataaaaaatacactacGAAGCAACAGCTCAAGATTCACACAAGATCTCATACAGGTGAACGTCCTTACTGCTGCAAGATATGCCTAAAAGACTTCAAAGACAGGTGGAAATTGACTATGCATGAACAAACCCACACCGGTTTAAAACCTTTTGAGTGTGATGAGTGCGGTAAAAAGTATACTACGAAGTATCAGTTGACAACTCACAGCCGTTTGCATTCGAAAGACAAATTGTTCGGTTGTAAAATTTGTAAGAGAGAGTTTACGGAGAAGTGCAAGTTAGCTGTTCATGAGAGAACACACTTGGGTCTGAAGCCATATTCTTGTGATCTCTGCGATAAGAAATACAGAATGAAGTCGCATTTGAAGTCCCATATTGAAAGTATGCATTTACAACCTATTAACATGACTGATTTATGCCGCTGCCGCTGCTGCCATGCAGAAGGCAACTTCAGGAGCTTAGGAGTGTCGTCTAACACAAATGGAATTAACGAAATCTTCTGTGAAATGCTTCGTGAAACTTTTGGAGTAGACATTGTACCATTGTCTGACGATATTGGTGTTAACACCTACAGTATTTGTTCTCCGTGTGCATCTCGACTGAAAGACGCCTCTGATTTTAAAAGGCAAGTTGTGGCGTGTGAGAAAAAGCTGCTGGGTGTTATGGatgAACCTAATCACTGTCTCAAGCAAGTGAAAGTCAAATTCTCATGTGATATCTGTCCAAAGTCTTTCACGTACCAAGGAGCATTACAAATGCACATGAAAAAACATACAGGCGAGTCTCACTCGTGTCAGCTATGCGATGccaaattcttaaaaataaaagctttatCTAAACACATCGATGAATCTCATCGAGAAAACGGAAAATacatttgtactatttgtaaCACCGATTATGACaaagtgaaattatttaaataccatTTAAAAACGCATTTAGGTGAAATATTCAAATGTGACCACTGTGATAAAGAATATCCTAGGAAAAGGAGTTTAGTAGAACACCTAAAATTACATTTCGGAGTAAGAGACTTCGCATGTAAAGTGTGTGATaaatcattcattcataatCAGCAGTTGAAATATCATATGTCTAGTCATACAAAAGAATATCAGTACACCTGTGTTCTCTGTGGAAAGCCGTTTTCCCAACAGAATAACTTGAAACGTCACTACATATTAGTTCATTCCGGGGTAAAACCATTATACTCATGCAGTGTCTGTAAAAAGCAGTTTTCAAGCAAGCAATACATGATAAAACATGAGAAAGAACACTCCGGTGAACGACCGTACTCATGTGATTACTGCGAGAAAGGTTTTAAGGATAAGAATACGTTGAGAACTCATGTGAAGGTACATACGGGTGAGAGACCGTACAAGTGTAGTTACTGTGAGAAGCGGTTTGCTCATATCGCTACCTTGACGTCTCATGAAAGAAATCATAAGGGTGAGAAACCGTTTGCATGTAAAGTTTGTATGAAGGCGTTTGTGACTAGTTCGAGATTGAAGATACACATGAGAGTACATACGGGCGAGAAGCCGTATTCTTGCGAGATTTGTGACAAATCATTCGCCGAGAACGGACATCTGAAACGTCACATGCGAGCGGTGCACCCGGACGAGTCGCAACAACAACGCGTTAGCGTCCTAAAGAAAAGTAATGCCTGA
- Protein Sequence
- MTETICDTNTIKDEPVDCNESNPPSPEEKLEVNIDPNDYYVSVKGEPPDPSEEADIIMENEQSPFGNEYQKYHVDVGISCLKNPYEYPPEFMTNNIEPKTKHKKRKSVPRKIIQAKETSDDSDDKLHVCTTCGKSYKSKPKLIIHIRVHTGERPFICSVCKKGFRTNWTMKAHELTHTGIKPHCCSQCDKKYTTKQQLKIHTRSHTGERPYCCKICLKDFKDRWKLTMHEQTHTGLKPFECDECGKKYTTKYQLTTHSRLHSKDKLFGCKICKREFTEKCKLAVHERTHLGLKPYSCDLCDKKYRMKSHLKSHIESMHLQPINMTDLCRCRCCHAEGNFRSLGVSSNTNGINEIFCEMLRETFGVDIVPLSDDIGVNTYSICSPCASRLKDASDFKRQVVACEKKLLGVMDEPNHCLKQVKVKFSCDICPKSFTYQGALQMHMKKHTGESHSCQLCDAKFLKIKALSKHIDESHRENGKYICTICNTDYDKVKLFKYHLKTHLGEIFKCDHCDKEYPRKRSLVEHLKLHFGVRDFACKVCDKSFIHNQQLKYHMSSHTKEYQYTCVLCGKPFSQQNNLKRHYILVHSGVKPLYSCSVCKKQFSSKQYMIKHEKEHSGERPYSCDYCEKGFKDKNTLRTHVKVHTGERPYKCSYCEKRFAHIATLTSHERNHKGEKPFACKVCMKAFVTSSRLKIHMRVHTGEKPYSCEICDKSFAENGHLKRHMRAVHPDESQQQRVSVLKKSNA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -