Ahor024996.2
Basic Information
- Insect
- Anania hortulata
- Gene Symbol
- NFYA
- Assembly
- GCA_963576865.1
- Location
- OY756405.1:7326928-7338767[-]
Transcription Factor Domain
- TF Family
- NF-YA
- Domain
- CBFB_NFYA domain
- PFAM
- PF02045
- TF Group
- Other Alpha-Helix Group
- Description
- Diverse DNA binding proteins are known to bind the CCAAT box, a common cis- acting element found in the promoter and enhancer regions of a large number of genes in eukaryotes. Amongst these proteins is one known as the CCAAT-binding factor (CBF) or nuclear transcription factor Y (NF-Y) [1]. CBF is a heteromeric transcription factor that consists of two different components both needed for DNA-binding. The HAP protein complex of yeast binds to the upstream activation site of cytochrome C iso-1 gene (CYC1) as well as other genes involved in mitochondrial electron transport and activates their expression. It also recognises the sequence CCAAT and is structurally and evolutionary related to CBF. The first subunit of CBF is known as CBF-A or NF-YB in vertebrates, and HAP3 in budding yeast. The second subunit is known as CBF-B or NF-YA in vertebrates and HAP2 in budding yeast. It is a protein of 265 to 350 amino-acid residues which contains a highly conserved region of about 60 residues. This region, called the 'essential core' [2], seems to consist of two subdomains: an N-terminal subunit-association domain and a C-terminal DNA recognition domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 1.7e-13 3.5e-09 38.2 2.9 3 36 182 214 180 215 0.93 2 8 3.2e-09 6.4e-05 24.6 1.0 10 44 214 251 211 253 0.92 3 8 5e-12 9.9e-08 33.6 2.8 5 35 265 294 262 295 0.92 4 8 2e-08 0.00039 22.1 1.2 10 41 295 329 292 334 0.84 5 8 1e-13 2e-09 39.0 0.9 5 44 341 383 338 385 0.93 6 8 1e-13 2e-09 39.0 0.9 5 44 397 439 394 441 0.93 7 8 4.4e-12 8.8e-08 33.7 3.3 5 36 453 483 450 484 0.92 8 8 9.1e-23 1.8e-18 68.0 9.3 10 56 483 529 480 529 0.98
Sequence Information
- Coding Sequence
- ATGGAGCATGCACAGATACAGAGCTCTGATGGCACACAGGTGGTGACCATCAACGGGCAGCAACTGCAAGTGCTACAAATGAGTAACTCCCCACACATGATACAAGGGCCTAATGGACAACAGATTGTGGTCCATACTATACCTTCTACAGGCCCTGCTATACAGGTGGCGACACAAAATGGCCAACAATTGCAGCAGTTGCAAGTGTTGCCAATATCCAGTCTTCAAGGAGCTAGCAACAACATACAGCCAATGCAACTAGTGCAAACGCCAGATGGACAGACGTTCCTCTACCAGCCGACCGCCAGTGCACAGCCCACCATAGATCAGCACCAGATCATACACCAACCCGCCGTGATAAACCTGAATGGAAACTTGGTGCAAGTGGCAGGCGTGAGCAATACAGTGCAGCCGCAACAGATTGTCAACCAACCCAATATTGTTATGATGGTGAACGGCAACAGCGGCGCCACGGCCAGCAGTAGCTCCGAGGCGAGCGCGGGGCTGTGCTCGCCCGGCGGGGGCTCCGACGAGGAGCCGCTGCTGTACGTGAACGCGCGCCAGTACAAGCGCATCCTcaagcgccgcgccgcgcgcgccaaGCTGCACGAGCAGGGCAAGATACCCAAGGAGCGCCCGTACAAGCGCATCCTcaagcgccgcgccgcgcgcgccaaGCTGCACGAGCAGGGCAAGATACCCAAGGAGCGCCCGGTAACTGCACccgcactacactacacactacacacgcacacacctgTGCACCTGTgcacctgtgacgtcacagcgcGAGTGAACGCGCGCCAGTACAAGCGCATCCTcaagcgccgcgccgcgcgcgccaaGCTGCACGAGCAGGGCAAGATACCCAAGGAGCGCCCGTACAAGCGCATCCTcaagcgccgcgccgcgcgcgccaaGCTGCACGAGCAGGGCAAGATACCCAAGGAGCGCCCGGTAACTGCACccgcactacactacacacgcacacacctgtgcacctgtgacgtcacagcgcGAGTGAACGCGCGCCAGTACAAGCGCATCCTcaagcgccgcgccgcgcgcgccaaGCTGCACGAGCAGGGCAAGATACCCAAGGAGCGCCCGGTAACTGCACccgcactacactacacactacacacgcacacacctgTGCACCTGTgcacctgtgacgtcacagcgcGAGTGAACGCGCGCCAGTACAAGCGCATCCTcaagcgccgcgccgcgcgcgccaaGCTGCACGAGCAGGGCAAGATACCCAAGGAGCGCCCGGTAACTGCACccgcactacactacacactacacacgcacacacctgTGCACCTGTgcacctgtgacgtcacagcgcGAGTGAACGCGCGCCAGTACAAGCGCATCCTcaagcgccgcgccgcgcgcgccaaGCTGCACGAGCAGGGCAAGATACCCAAGGAGCGCCCGTACAAGCGCATCCTcaagcgccgcgccgcgcgcgccaaGCTGCACGAGCAGGGCAAGATACCCAAGGAGCGCCCGAAATATCTACACGAGTCGCGACATAGGCACGCAATGAACAGGATACGAGGGGAAGGCGGACGATTCCACTCCGGTAGTAAAAGAGATATGGAAAACGTCGACATTTCAGAAGACTTGAAACAGCTTGAAGATATGAAGCCCGATACCGTTTCTATCACAATCATACAGgACGATGACACACAAGACCGACAGCCCAACCAGTGGCGGCGGCTCGCGCCACACACCTCGCTGCAGTCCGCGTAG
- Protein Sequence
- MEHAQIQSSDGTQVVTINGQQLQVLQMSNSPHMIQGPNGQQIVVHTIPSTGPAIQVATQNGQQLQQLQVLPISSLQGASNNIQPMQLVQTPDGQTFLYQPTASAQPTIDQHQIIHQPAVINLNGNLVQVAGVSNTVQPQQIVNQPNIVMMVNGNSGATASSSSEASAGLCSPGGGSDEEPLLYVNARQYKRILKRRAARAKLHEQGKIPKERPYKRILKRRAARAKLHEQGKIPKERPVTAPALHYTLHTHTPVHLCTCDVTARVNARQYKRILKRRAARAKLHEQGKIPKERPYKRILKRRAARAKLHEQGKIPKERPVTAPALHYTRTHLCTCDVTARVNARQYKRILKRRAARAKLHEQGKIPKERPVTAPALHYTLHTHTPVHLCTCDVTARVNARQYKRILKRRAARAKLHEQGKIPKERPVTAPALHYTLHTHTPVHLCTCDVTARVNARQYKRILKRRAARAKLHEQGKIPKERPYKRILKRRAARAKLHEQGKIPKERPKYLHESRHRHAMNRIRGEGGRFHSGSKRDMENVDISEDLKQLEDMKPDTVSITIIQDDDTQDRQPNQWRRLAPHTSLQSA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -