Basic Information

Gene Symbol
pnr_1
Assembly
GCA_950371115.1
Location
OX493329.1:23180270-23197362[-]

Transcription Factor Domain

TF Family
zf-GATA
Domain
zf-GATA domain
PFAM
PF00320
TF Group
Zinc-Coordinating Group
Description
This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 3.1e-17 1e-13 51.6 4.2 1 35 117 150 117 151 0.97
2 2 4.5e-18 1.5e-14 54.3 5.9 1 34 171 203 171 205 0.98

Sequence Information

Coding Sequence
ATgttcggcggcggcggcggcggcggctacggcggcggcggcggcggcgagtgCGGCGAGGGCTACGGGCTGGGCTACGTGGCGGGCGGCGGCCGCCTGCAGCAGTACGCGGCGCACTTCGCGCCGCACCAGAACGTGTGGCACCACCATCACGCTGCGCACCATGACTCCTACGGTGGCGGCGGCGTGAGCGGCGTGGGCAGCGTGGGCGGCGTGCCCGGCGTGCCCAGCGGCCTGTACTCGCAGAACGTGGTCATGGGCTCCTGGTGCGCGCCCTACGACGCACTACAGCGCCCTCCCGGTTATGATGGCGTCCTGGAGGTGTACGAGGACGGCAGCGGACGGGAGTGCGTCAACTGCGGCGCCAACAACACGCCGCTGTGGCGGCGCGACGCCACGGGCCACTACCTGTGCAACGCGTGCGGCCTCTACACGCGCATCAACGGCGTCAACCGGCCGCTCGTCAAACCCACGAAACGCCTGTCGGCGGCGCGGCGGCACGGGCAGTGCTGCACCAACTGCGGCTCGCGCACCACCACGCTGTGGCGCCGCAACAACGACGGCGAGCCCGTCTGCAACGCCTGCGGCCTCTACTACAAGCTGCACGGCATCAACCGaCCACTAGCAATGAGAAAAGACGGCATTCAGACAAGGAAGCGCAAGCCCAAGAAATCTGGCAGCACAACGAAACCGCCCCAGGACGCCGCCAAGAAAGAAGGACACAGCTCACCTAGTCTAGATGACAGCAAACCGAGCGTGGGCGAAGTGCCCCTCCCGCTCAGCTCGTCGCTGTCGGCGCACGGCGCGACGCCCAAGCCGCGCGAGCACGCCGACGCGACGCCGCacgcgcacgcacacacgcacgcgcacacgcacgcgcacgcgcacgcacacacgcacaacGCGCAGTACCCGCTGGGGCTGTCCTCGCCCCCCTTCCTGTCCAACCCGTCGCTGTTCAACATCAAGAGCGAGCCCAGCGCAACCAACGGCTACGACGGGTACTCGCACGCAGGCGGCCACTACCACTCGCAGCAACATTATCTACATGCGCTGCAGTATGGGCTCAGCAAtggagaagaagaagaaggcagcggcttcctgcaccAGCGCAACGTGACCGCGCACGCCAAGCTCATGGCGTCTACGTAG
Protein Sequence
MFGGGGGGGYGGGGGGECGEGYGLGYVAGGGRLQQYAAHFAPHQNVWHHHHAAHHDSYGGGGVSGVGSVGGVPGVPSGLYSQNVVMGSWCAPYDALQRPPGYDGVLEVYEDGSGRECVNCGANNTPLWRRDATGHYLCNACGLYTRINGVNRPLVKPTKRLSAARRHGQCCTNCGSRTTTLWRRNNDGEPVCNACGLYYKLHGINRPLAMRKDGIQTRKRKPKKSGSTTKPPQDAAKKEGHSSPSLDDSKPSVGEVPLPLSSSLSAHGATPKPREHADATPHAHAHTHAHTHAHAHAHTHNAQYPLGLSSPPFLSNPSLFNIKSEPSATNGYDGYSHAGGHYHSQQHYLHALQYGLSNGEEEEGSGFLHQRNVTAHAKLMAST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2